Taeniopygia guttata (zebra finch): 100227753
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Entry
100227753 CDS
T01082
Symbol
PNN
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03013
Nucleocytoplasmic transport
tgu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100227753 (PNN)
03015 mRNA surveillance pathway
100227753 (PNN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgu03019
]
100227753 (PNN)
03041 Spliceosome [BR:
tgu03041
]
100227753 (PNN)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100227753 (PNN)
Spliceosome [BR:
tgu03041
]
Complex C
Other components
EJC/TREX
100227753 (PNN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
100227753
NCBI-ProteinID:
XP_002200563
Ensembl:
ENSTGUG00000012046
LinkDB
All DBs
Position
5:38566860..38576846
Genome browser
AA seq
694 aa
AA seq
DB search
MAVAVRALQEQLEKAKESLKHVDENIRKLTGRDPNDVRPPQNRLLALAGPGGGRGRGSLL
LRRGFSDSGGGPPAKQRDLEGASSRLGGERRTRRESRQESDAEDDDIKKPALPSSVVATS
KERTRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVAIATERQKRRQEIEQKLE
VQAEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTK
PHLFYIPGRMCAATQKLMDESQRKMNALFESRRNEFAEQINKMEARPRRQSVKEKEHQEV
QKEEKKEEQNKEQEEGKVAQQVEEMETGNQHNDVEMEEVGEEKGKIGSGSGHSDAEKEQE
EDEQKHDMEMKVDEPTEVRENDKQQDGQHEEITVVKEESENIQPVDNEQDVAEMNETDSV
EPVENENGKEIEPETECDAQPEKVCNVPSPKKEKGIKTENNAELENTQEKTPEAQTESVA
EALSQPQSVPLAQSPQLSQSTQDTEPQTDKDENAVVSVKVVEAQAEQNETPSAESKSKTR
SRSRGRAGNKTGHTRSSSSSSSSTSSSTTSASSSSTGSSSSRSSSTSSSTTSGSTSRDSS
SSSSSSSESRSRSRGRGHNRDRKRRRSTDRKRRDASGVDRSHKSSKGGSRDTKGSKDKSS
RSDRKRSISESSRSGKRTSRSERDRKSDRKDKRR
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcggtgcgcgcgctgcaggagcagctcgagaaagccaaggaaagcctcaag
cacgtggacgagaatatccgcaagctcacgggccgggaccccaatgatgtgaggccccct
cagaacaggctgttagccctcgcaggccccggtggaggtagagggcgtgggagcttattg
ctaaggcgtggattctcggatagtggaggaggacccccagccaaacagagggatcttgaa
ggtgcatccagtaggctgggtggagaacgtcggacaagaagagaatcacgccaagaaagc
gacgcagaggatgatgatattaaaaagccagcgttgccatcttctgttgttgctacctcc
aaagagcgaacacgtcgagaccttatacaagatcaaaatatggatgaaaaaggaaaacaa
aggaatcgacgtatatttggcttgttgatgggtactcttcaaaaatttaaacaggagtcc
acagttgctattgctaccgagaggcaaaagagacgacaagaaattgaacagaaacttgaa
gtgcaggcagaagaagagagaaagcaagttgaaaatgagaggcgagaactgtttgaagaa
agacgtgctaaacagacagagctgcggttattggagcaaaaggttgagcttgctcagttg
caagaagaatggaatgaacataatgctaaaataattaaatacataagaacaaagacaaaa
cctcatttattctacatacctggcagaatgtgtgctgctacacagaagctgatggacgag
tcacagagaaagatgaatgcactctttgaaagcaggagaaatgaatttgcagagcagatt
aacaaaatggaggccagacccagaagacaatctgtgaaggaaaaagaacatcaggaggtg
cagaaggaagaaaagaaggaagaacagaacaaggagcaggaagagggtaaggtggctcag
caggtggaagagatggagacaggtaatcagcacaatgatgtagaaatggaggaggtaggg
gaggaaaagggaaaaataggttcaggttcagggcatagtgatgcagaaaaagaacaggag
gaggatgagcagaaacatgatatggagatgaaggtagacgagcctactgaggtgagagag
aatgacaagcaacaggatggtcagcatgaggagatcacagttgtaaaagaggaaagtgaa
aacattcagcctgtggataatgagcaggatgtggctgaaatgaatgagacagatagtgta
gaacctgtagaaaatgaaaatggcaaagaaatagaaccagaaacagagtgtgatgctcag
ccagaaaaagtatgtaatgttccttctcctaagaaggagaaaggtatcaaaacagaaaat
aatgctgaacttgaaaacacacaggagaaaacacctgaagctcaaacagaatctgtggct
gaggctctatctcagccacagtctgtgccactagcacaatcacctcagttgtctcagtcc
actcaggatacagagccccagacagacaaggatgaaaatgctgtggtgtctgtaaaggtg
gttgaagcccaggcagagcagaatgagacaccgagtgcagaaagtaagagtaagactagg
agtagaagcaggggtagggcaggaaacaaaactggtcatacccgtagcagcagcagtagt
agcagtagcacttcaagcagtactaccagtgcaagtagttccagtactggcagcagttcc
agtcggagcagttctaccagcagcagcactacaagtgggagtacgagcagggacagtagc
agcagtagctctagcagcagtgagagtagaagtcgaagccgaggcagggggcataacaga
gatagaaaacgcagaaggagcacagacaggaaacgaagggatgcttcgggagtagataga
agtcacaagtcctcaaaaggtggtagtagagatactaaaggctcaaaggataaaagttca
aggtctgacagaaagagatctatatcagaaagtagtcggtcaggcaagagaacttcacgg
agtgaaagagaccgtaaatcagacaggaaagacaaaaggcgttaa
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integrated database retrieval system
