Taeniopygia guttata (zebra finch): 100227809
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Entry
100227809 CDS
T01082
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100227809 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tgu03041
]
100227809 (PRPF6)
Spliceosome [BR:
tgu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100227809 (PRPF6)
Complex C
U5 SnRNP specific factors
100227809 (PRPF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_17
TPR_2
TPR_8
ARM_TT21_2nd
FAT
TPR_CcmH_CycH
TPR_1
T7SS_EccA1_N
ARM_TT21_C
ARM_TT21_5th
TPR_21
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
100227809
NCBI-ProteinID:
XP_030144767
Ensembl:
ENSTGUG00000007221
UniProt:
H0ZA71
LinkDB
All DBs
Position
20:8544439..8568886
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AA seq
941 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQTADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQSGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAIMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEALKHYEDFPKLWMMKGQIEE
QKELVEKAREAYNQGLKKCPHSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPDLW
LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR
CENAEPRHGELWCDVSKDIENWQKKIGEILVLVAAKLKNTF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagaagaagccgttcctaggcatgcccgcgcccctgggttacgtgccgggg
ctgggccgcggagccacgggcttcaccacgcgctccgacatcggccctgcccgcgatgcc
aacgaccccgtggacgaccggcacgccccgccgggcaagagaaccgtgggcgaccagatg
aagaagaaccagaccgcagatgatgacgatgaggatttgaatgacaccaactacgatgag
ttcaatggctatgctgggagcctgttctcaagtggcccctatgaaaaagatgatgaagaa
gcagatgctatttatgcagctttggacaagaggatggatgaacgcaggaaagaaaggagg
gaacaacgagaaaaagaggaaatagaaaagtaccgtatggaacggcccaaaattcaacag
cagttctcagatttgaaacggaaactagcggaggtcactgaggaggagtggctgagcatt
cctgaggttggcgatgccaggaacaagcggcagaggaatcctcgttatgagaagctgact
cctgtccccgacagcttctttgcaaagcatttgcagtcaggggagaatcacacttcagtg
gacccacgccagacccaatttggtggactgaatactccatatccagggggtttgaatact
ccatacccaggaggaatgacaccaggcttgatgacacctgggacaggtgaattggatatg
aggaagattggccaagccaggaacaccttgatggatatgaggctaagccaggtgtcggac
tctgtgagtggccagactgtagtggacccaaaaggatatttgacagacttgaattccatg
attcccacacacggaggagatatcaatgatatcaaaaaagcccgtttgctcctgaaatcc
gtccgagagaccaatcctcatcatccaccagcctggatagcatctgcccgactggaagag
gtcactggcaaactccaggtggctcgaaacctcatcatgaaaggaacagagatgtgccct
aagagtgaagatgtttggttggaagctgctcggcttcagcctggagatacagccaaggct
gttgtggcccaggctgtgcggcacctgccgcagtctgtgcggatctatatcagagcagca
gagctggagacagacatccgtgccaagaaacgtgtccttaggaaagcccttgagcacgtt
ccaaactcggtgcgtttgtggaaagcagccgtggagctggaggagcctgaggatgccagg
atcatgctgagccgggctgtggagtgctgtccaaccagtgttgaactgtggctggcgctg
gcaaggctggagacatatgagaacgctcgtaaagtccttaacaaagcccgggagaatatc
ccgacggatcgtcacatctggatcactgctgccaaactggaggaagccaatggaaacacc
cagatggtggagaaaatcattgacagagccatcacatctcttagggctaacggggtggaa
atcaacagggagcagtggattcaggatgccgaggaatgtgataaagctggaagtgtggcc
acatgccaggcaatcatgagagctgtgatcgggattgggatcgaggaagaagatcggaaa
cacacctggatggaagatgcagacagttgtgttgctcataatgccctggagtgtgcccga
gccatttatgcctatgccttgcaagtcttcccgagcaaaaagagtgtgtggctgcgagca
gcctactttgaaaagaaccatggaaccagagaatccttggaggctcttttgcagagagct
gttgctcactgtcccaaagcagaggtgctgtggctcatgggagccaaatccaagtggctg
gcaggagatgtgccagcagccagaagcatcttggccctggctttccaggccaaccccaac
agcgaggagatctggctggctgccgtgaagctcgagtcggagaacaatgagtatgaaaga
gcgaggaggctgctggcaaaggctcgcagcagtgcccccacagcaagggtcttcatgaag
tctgtgaagttggagtgggtgcttgggaacattgctgcagcccaggagctctgtgaggaa
gccctgaaacactatgaggacttccccaaattgtggatgatgaaaggacaaattgaggaa
caaaaagagctggtagagaaagcacgggaggcttataatcaagggttgaagaagtgcccc
cattccatacccctgtggcttttgctgtccaggctggaggagaaagttgggcagctgact
agagcaagagccatcttggaaaagtctcgcctgaagaatccaaagaatccagatctctgg
ttggagtctgtgcgcttggagtaccgagctgggctgaagaacattgcaaacacactgatg
gccaaggcactgcaagagtgtcccaattcaggaatcctgtggtcagaagcaattttcctt
gaagcacgaccgcaacgaaagaccaagagtgtggatgctctcaagaagtgtgaacatgac
ccacatgtcctgctggctgtggccaagctgttctggagcgagcggaaaataaccaaggcc
agagagtggttccaccgcacagtgaagatagactctgacctgggggatgcctgggccttc
ttttacaaatttgagctccagcatggcacagaggaacaacaagaagaggtgaggaagcgc
tgtgagaatgccgaacctcgccacggagagctctggtgtgatgtctccaaggatatagag
aactggcagaaaaagattggagagattcttgtgcttgttgcagccaagctgaaaaatacc
ttctag
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