KEGG   Taeniopygia guttata (zebra finch): 100227869
Entry
100227869         CDS       T01082                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4 isoform X2
  KO
K10755  replication factor C subunit 2/4
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
tgu03030  DNA replication
tgu03410  Base excision repair
tgu03420  Nucleotide excision repair
tgu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100227869 (RFC4)
   03410 Base excision repair
    100227869 (RFC4)
   03420 Nucleotide excision repair
    100227869 (RFC4)
   03430 Mismatch repair
    100227869 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tgu03032]
    100227869 (RFC4)
   03036 Chromosome and associated proteins [BR:tgu03036]
    100227869 (RFC4)
   03400 DNA repair and recombination proteins [BR:tgu03400]
    100227869 (RFC4)
DNA replication proteins [BR:tgu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    100227869 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    100227869 (RFC4)
Chromosome and associated proteins [BR:tgu03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    100227869 (RFC4)
DNA repair and recombination proteins [BR:tgu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     100227869 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    100227869 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 Rad17 AAA_16 AAA_11 AAA_30 AAA_22 AAA_24 Mg_chelatase DUF815 SLFN-g3_helicase AAA_14 RuvB_N AAA_19 AAA_5 TIP49_C AAA_28 AAA_23 DNAX_ATPase_lid ResIII AAA_7
Other DBs
NCBI-GeneID: 100227869
NCBI-ProteinID: XP_002196271
Ensembl: ENSTGUG00000010469
LinkDB
Position
9:complement(17444071..17463729)
AA seq 362 aa
MQAFLKGPASISTKPVAAKEKNAAGSSGEGKRAKPIPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAISYLVKVSEGDLRKAI
TFLQSATRLMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSFEKLETLAKNLINEGFA
VAQLVNQLHDTIVESEDYSDKQKSAIVEKLAEVDKCLADGADEFLQLMSLCALVMQQLTQ
NI
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaagggcccggcctctatcagcaccaaacccgtcgctgccaaggaa
aagaacgcggccggcagcagcggggagggcaagagggccaaacccatcccctgggtggag
aaatatcgtcccaaaaatgtggatgaagtcgccttccaggatgaagttgtagctgtgctg
aagaagtccctggaaggtgctgatcttccaaatctgttgttctatggcccacctggaact
ggaaagacttccactattttagcagctgctagagaactgtttgggcctgatttattccgg
cagagagtccttgagttaaatgcttctgatgagcgtgggatacaagtgattcgggaaaaa
gtgaaggcttttgctcagcttacggcgtctggaagccgttcagatggtaaaatgtgtcct
ccctttaaaattgtgatcctggatgaagcagactctatgacttcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatctaaaacaacacggttctgtcttatttgtaactac
atcagcagaataattgaacctttaacgtctcgatgctccaaattccgcttcaagcctttg
tccgacagtatccaacagcagaggctgttggatgtttctgagaaggaacacgtgaaaatc
agtaatgaggcaatatcatacctggtgaaagtgtcagaaggagatttaagaaaagcaatt
acttttcttcagagtgccactcgcctaatgggtgggaaggaaatcacagagaaaataatc
actgaaattgctggggtcatccctaaagaaacaattgatgaactgctattgggctgccag
agtggttcctttgagaaactggaaacactggcaaagaatctcatcaatgaggggtttgct
gttgctcagcttgtaaaccagctgcacgacaccattgtggagagtgaagattacagcgat
aagcagaaatctgccatcgttgagaaacttgcagaagtggacaagtgcctggcagatggt
gctgatgaattcttgcagctgatgagtctctgtgcccttgtgatgcagcagctcacacag
aacatctga

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