Taeniopygia guttata (zebra finch): 100228021
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Entry
100228021 CDS
T01082
Symbol
SHMT1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu00260
Glycine, serine and threonine metabolism
tgu00630
Glyoxylate and dicarboxylate metabolism
tgu00670
One carbon pool by folate
tgu01100
Metabolic pathways
tgu01200
Carbon metabolism
tgu01230
Biosynthesis of amino acids
tgu01240
Biosynthesis of cofactors
tgu04981
Folate transport and metabolism
Module
tgu_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
100228021 (SHMT1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
100228021 (SHMT1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
100228021 (SHMT1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
100228021 (SHMT1)
Enzymes [BR:
tgu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
100228021 (SHMT1)
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Gene cluster
GFIT
Motif
Pfam:
SHMT
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-GeneID:
100228021
NCBI-ProteinID:
XP_002188153
Ensembl:
ENSTGUG00000007082
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Position
14:complement(6146490..6152880)
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AA seq
482 aa
AA seq
DB search
MASSTQGLPSAELWASHNKMVMEPLDTNDPEVHSIIKKEKQRQRMGLELIASENFASRAV
LEALGSCMNNKYSEGYPGQRYYGGTEFVDQLERLCQKRALQAYQLDPQKWGVNVQPYSGS
PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSLFFESMPYKVNPKTGYI
DYDKLEENARLFHPKLIIAGVSCYSRNLDYARMRKIADDNGAYLMADMAHISGLVAAGVV
PSPFEHCDIVSTTTHKTLRGCRAGMIFYRKGTRSVDPKTGKETLYNLESLINQAVFPGLQ
GGPHNHAIAGIAVALHQAMTPEFKAYQQQVVANCKALSSALMEMGYDIVTGGSDNHLILV
DLRSKGTDGGRAERVLELCSIACNKNTCPGDVSALRPSGLRFGTPALTSRGFRQDDFRKV
AQYIHRGIELALRVQKDMSPKATLKEFKDKLEDPKYRGELKALKEEVEAFAGTFPLPGLP
VL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgagctcaacacagggcctccccagcgccgagctctgggcctcccataacaagatg
gtgatggagccgctggacaccaacgacccagaggtgcacagcatcatcaagaaggagaag
cagcggcagaggatggggctggagttaattgcgtcggagaacttcgcaagccgagcagtc
ctggaggccctgggatcctgcatgaacaacaaatactcggagggttacccaggacagagg
tactacggcgggacggagtttgtggaccagctggaaaggctgtgccagaagcgagccctg
caggcttaccagctcgacccccagaagtggggagtcaatgtccagccctactcagggtca
cccgcaaactttgcggtgtacacggccctggtggagccccacggcaggatcatggggctg
gacctgcccgacggtggccacctcacccacggcttcatgacggacaagaagaagatctct
gccacctctctgttcttcgagtccatgccctacaaggtcaaccccaagaccggttacatc
gactatgacaagctggaggagaatgcccggctcttccaccccaagctgatcatagcgggt
gtcagctgctactcgcggaacctggactacgcccgcatgcggaagatcgccgacgacaac
ggggcctacctcatggccgacatggcccacatcagcgggctggtggccgccggcgtggtg
ccctcgcccttcgagcactgcgacatcgtctccaccaccacccacaagaccctgcggggc
tgcagggccggcatgatcttctaccgcaaaggcacccgcagcgtggaccccaagacaggc
aaggagaccctctacaacctggagagcctcatcaaccaggcggtgttcccggggctgcag
ggaggcccacacaaccatgccattgcaggaatcgctgtggcgctgcatcaggccatgaca
cctgagttcaaggcttaccagcagcaggtggtggccaactgcaaggcactctcctcagca
ctgatggagatgggctatgacatcgtcacagggggctctgacaatcacctgatcctcgtg
gacctgcgcagcaaaggcacagacggcggccgggccgagcgggtgctggagctctgctcc
atcgcctgcaacaagaacacgtgccctggtgatgtcagtgccctgcggcccagcggactc
cgtttcggcacgccggctctcacctcgcgcggcttccggcaggacgatttccgcaaggtg
gcccagtacatccacagagggatcgagctggctctacgtgtgcagaaggacatgagcccc
aaggccacgctgaaggaattcaaggacaaattggaggacccaaaataccgtggggagctg
aaggcactgaaggaagaggtggaggccttcgcaggcacgttcccgctcccggggctgcct
gtcctgtaa
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