Taeniopygia guttata (zebra finch): 100228083
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Entry
100228083 CDS
T01082
Symbol
USP39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100228083 (USP39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tgu03041
]
100228083 (USP39)
Spliceosome [BR:
tgu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
100228083 (USP39)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
100228083
NCBI-ProteinID:
XP_032608122
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Position
22:complement(4381160..4387000)
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AA seq
570 aa
AA seq
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MSSRGRRDRDPRDPREPRDWPRGRRDAERERARREAAEALPVDLARVKREPGTGTGTGTG
TGSGVWGGSGSAAPVRVKREREPDGDSDPEPEPAVRYGRFDPEDQRSRHCPYLDTINKSV
LDFDFEKLCSISLSHINVYACLVCGKYFQGRGLKSHAYIHSVQLSHHVFLNLHTLKFYCL
PDNYEIIDSSLEDITYVLKPTFTAQHIAHLDKQAKLSRAYDGTTYLPGIVGLNNIKANDY
ANAVLQALSNVPPLRNYFLEEENYRGIQRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVS
PHEMLQAVVLCSKKNFQITKQGDGVEFLSWFLNALHAALGGTKRKKKTIVTDVFQGSMRI
FTKKLPHPDLPAEEKAQLLQNSEYQERMVESTFLYLTLDLPTAPLYKDEKEQLIIPQVPL
FSILAKFNGSTEKEYKTYKENFLKRFQLTRLPPYLIFCIKRFTKNNFFVEKNPTIVNFPI
TNVDLREYLSEEVQAAHSHTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVT
DILPQMITLSEAYIQIWKRREEDETNQQGA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagccgggggcggcgggaccgcgacccccgcgacccccgggagccccgggactgg
ccgcggggccggcgggacgcggagcgggagcgcgcgcggcgggaggcggcggaggcgctg
ccggtggatctggcgcgcgtcaagcgggaaccgggcaccggcaccggcaccggcaccggc
accggcagcggcgtctgggggggctccggcagcgccgcgcccgtgcgggtgaagagggag
cgggagcccgatggagactcggaccctgagcccgaacccgccgtgcgctacgggcgcttc
gaccccgaggaccagcgcagccggcactgcccctacctggacaccatcaacaagagtgtc
ctggacttcgactttgagaagctctgctccatctccctgtcccacatcaacgtctacgcc
tgcctcgtctgcgggaagtacttccagggccgcgggctgaagtcgcacgcctacatccac
agcgtgcagctgagccaccacgtgttcctcaacctgcacacgctcaagttctactgcctg
cccgacaactacgagatcatcgactcctccctcgaggacatcacgtacgtgctcaagccc
accttcacagcccagcacatcgcccacctggacaaacaggccaagctgtcccgggcctac
gatggcaccacgtacctgcctggcatcgtggggctcaacaacatcaaggccaacgactat
gccaacgctgtgctccaggccctgtccaacgtgcctcccctgaggaattacttcctggag
gaggagaactaccgtggcatccagcgcccgcccggggacatcatgttcctgctggtgcag
cgcttcggggagctgatgaggaagctctggaacccccgcaacttcaaggcacacgtgtcg
ccccacgagatgctgcaggccgtggtgctctgcagcaagaagaacttccagatcaccaag
cagggggatggggtggagttcctgtcctggttcctgaacgcgctgcacgcggcgctgggc
ggcaccaagaggaagaagaagaccatcgtcaccgacgtgttccagggctccatgcgcatc
ttcaccaagaagctgccgcaccctgacctgcccgcggaggagaaggcgcagctgctgcag
aacagcgagtaccaggagcgcatggtggagtccacgttcctgtacctgaccctggacctg
cccacggcgccgctctacaaggacgagaaggagcagctcatcatcccccaggtgcccctg
ttcagcatcctggccaagttcaacggcagcaccgagaaggagtacaagacctacaaggag
aacttcctgaagcgcttccagctgacgcgcctgcccccctacctcatcttctgcatcaag
cgcttcaccaagaacaacttcttcgtggagaagaaccccaccatcgtcaacttccccatc
acgaacgtggacctgcgggaatacctgtcggaggaggtgcaggccgcccactcccacacc
acctacgacctcatcgccaacatcgtgcacgacgggaagccctcggagggctcctaccgc
atccacgtcctgcaccacggcacagggaagtggtacgagctgcaggacctgcaggtgacc
gacatcctgccccagatgatcaccctgtccgaggcctacatccagatctggaagcgacgt
gaggaggatgagacgaaccaacaaggtgcatga
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