KEGG   Taeniopygia guttata (zebra finch): 100228235
Entry
100228235         CDS       T01082                                 
Symbol
SF3A1
Name
(RefSeq) splicing factor 3A subunit 1 isoform X1
  KO
K12825  splicing factor 3A subunit 1
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
tgu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100228235 (SF3A1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tgu03041]
    100228235 (SF3A1)
Spliceosome [BR:tgu03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    100228235 (SF3A1)
 Complex B
    100228235 (SF3A1)
 Complex C
   U2 SnRNP specific factors
    100228235 (SF3A1)
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin Ubiquitin_2 Rad60-SLD
Other DBs
NCBI-GeneID: 100228235
NCBI-ProteinID: XP_030141286
Ensembl: ENSTGUG00000010547
UniProt: H0ZJW6
LinkDB
Position
15:1316445..1329510
AA seq 790 aa
MPAGPVQAVPPAQPAPPAESKPPEEEPKEEAAPAKPVVGIIYPPPEVRNIVDKTASFVAR
NGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQS
AQQQLPQKVQAQVIQETVVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLT
QLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLLKLKKEAENPKEVLDQV
YYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEE
LGARILIQERYEKFGESEEVEMEVESDEEDEKQEKTDEPPAQLDQDTQVQDMDEGSDDED
EGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPAS
KMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETA
IGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDSKE
KIGPSKPNEIPQPPPPSSASNPPASAQPITSVPRPPTMPPPVRAAVVSAVPVMPRPPMTS
VVRLPPGSVIATPMPPIIHTPRINVVPMPPSAPPIMSPRPPPMIVPTAFVPAPPVAPVPS
PAPMPPVHPPPPMEDEPVSKKLKSEDSLIPEEEFLRRNKGPVTVKVQVPNMQDKTEWKLN
GQVLVFTLPLSDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMTSGSLIHL
ALKERGGRKK
NT seq 2373 nt   +upstreamnt  +downstreamnt
atgcccgccggacccgtgcaggccgtgcctccggcgcagcccgcgccccccgccgagagc
aaaccgccagaagaggagcctaaagaggaagcagcaccagccaagcctgtggtgggaatt
atttaccctcctccagaggtcaggaatattgtggacaagactgccagctttgtagccaga
aatggtccagaatttgaagcccgaattcgtcagaatgaaataaataaccccaagttcaac
ttcctgaaccccaacgacccttaccatgcctactaccggcacaaggtcagtgagttcaag
gagggcaaagcccaggagccctcggctgccatccccaaggtcatgcagcagcagcagagt
gcccagcagcagctcccacagaaggtgcaggcccaggtgatccaggagaccgtagtcccc
aaggagcccccgcccgagttcgagttcatcgcggaccctccgtccatctccgccttcgac
ctggacgtggtgaagctcacggcgcagttcgtggcccgcaacgggaggcagttcctcacc
cagctcatgcagaaggagcagaggaattaccagtttgatttccttcgcccccagcacagc
ctcttcaactacttcaccaagctggtggagcagtacacaaagatcttgatcccaccaaag
ggcttactcctcaagctcaagaaggaggccgaaaatcccaaggaagtcctggatcaggtc
tactacagagtggagtgggccaagttccaggagcgagagagaaagaaggaagaggaggag
aaggagaaggagcgtgttgcttatgcccagattgactggcatgacttcgtggttgtggaa
acagttgacttccagcccaacgagcaagggaatttccctcctcccaccactccagaagag
ctgggagctcgaatcctgatccaggagcgttatgagaagtttggggaaagtgaggaggtg
gagatggaggtggaatcagatgaggaagatgaaaagcaagaaaaaacagatgagcctcca
gcccagctggatcaagacacacaagtgcaggatatggatgaggggtcagatgatgaagat
gaaggtcagaaggttcctcctcctccagaaaccccgatgccacccccactccctcccaca
ccagatcaggtcattgtgcggaaagattatgatcccaaagcctcaaaaccgttaccaccc
gccccggctccggatgagtacctggtgtctcccatcactggagaaaagattcctgccagt
aaaatgcaggagcacatgaggattgggctcctggatccccggtggctggagcagcgggat
cgatccatccgggagaagcagagtgatgacgaggtctatgctccaggtttggatattgag
agcagcctgaagcagctggcagagcgtcgtactgatatctttggtgtagaagagactgcc
attggtaaaaagattggtgaagaagagatccagaaaccagaggaaaaggtgacctgggat
ggccactcaggcagcatggcccgcacacagcaggctgctcaggccaatatcactctgcaa
gagcaaattgaagccatccacaaggccaagggactggtgccagaggatgacagcaaggag
aagatcgggcccagcaaacccaatgagataccccagccgccccctccctcctcagcctcc
aacccccctgccagcgcccagcccattacatctgtacctcgtccccccaccatgcctcct
cccgtgcgcgccgccgtggtttctgcagtgccggtcatgcctcgtccccccatgacgtcc
gtggtccggctgcccccgggatccgtcatagccacccccatgcctcccatcatccacacc
ccacgcatcaacgtggtgcccatgcccccctctgctccccccatcatgagcccccgcccg
ccccccatgatcgtccccacagcctttgtccctgctcctcccgtggctccggtcccatcc
ccggcaccgatgcctcccgtccaccccccgccacccatggaggatgagccagtctccaag
aaactgaagagtgaggacagcctgattccagaggaggaatttctgcgcaggaacaagggc
ccggtcacggtcaaagtccaggttcccaacatgcaggacaagacggaatggaagctgaac
ggccaagtgctggtgttcaccctgcccctctcagaccaggtgtctgttataaaggttaag
atccacgaggccacagggatgccagctgggaagcagaagctgcagtatgagggcatcttc
atcaaggattccaactccctggcttattacaacatgacgagtggctctctgattcacctg
gccctcaaagagagaggaggcaggaagaaatag

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