Taeniopygia guttata (zebra finch): 100228989
Help
Entry
100228989 CDS
T01082
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tgu04121
]
100228989 (PDZRN3)
Enzymes [BR:
tgu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100228989 (PDZRN3)
Ubiquitin system [BR:
tgu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
100228989 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
Sina_ZnF
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-TRAF
Prok-RING_4
zf-rbx1
PDZ_Tricorn
TRAF3_RING
U-box
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
100228989
NCBI-ProteinID:
XP_030138892
LinkDB
All DBs
Position
12:3084273..3215148
Genome browser
AA seq
1054 aa
AA seq
DB search
MGFELDRFSGEVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVNCQRIS
TKELNHVLPLKSLILKLDIKCDNHARGCEAVVPLQQLGEHAETCDFSPAKCRNRGCRQVL
NLRDVEAHMRERCEARPAGLCEQGCGLLLTHGERRAGGHGCLRALRAHGAALQARAAALE
KALKKEALRAGKREQSLLSRLAAAQLELQVTALRYQKRFTQYSARLDALARARAASPGKG
EETKALTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDTGPAAKEGGLQIHD
RIIEVNGKDLSKATHEQAVEAFKTAKEPIVVQVLRRAPRAKAHEPQLVDAATQTDITFEH
IMALSKMGSPSPPVPGLDPYLLPEDHPSVHEYYDPNDYMGGIHQEMDRDELELEEVDLHR
VNSQDKLGLTVCYRTDDEDDMGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQNREEA
VALLSSEESKNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASMLQ
QKKHEEDGGTTDTATILSNQHEKDSGVGRTDDSTRNDESSEQENNGDDHTTSSNTLGSQK
KLTYSHDTLGSGDMQFSNESFISADCTDVDFLGIPVDECERFRELLELKCQVKSANPYSL
YYHNSSLEMSKSDQESVDRELEMLNEELRNIELECLNIVRAHKMQQLKEQYREPWMLHNS
GFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSLRRTAE
GISCQGNEGAAAYNVSQKSLCAGSESHESNPGKCHASAKEPEPGKQLESKERKGSDGSKS
PTHGQKPLVSPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCKDLAS
GQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAISEMKMGRY
WSKEERKQHLVKAKEQRRRREFMMQSRLECLKEQQGAEEKKEMNIIELSHKKMMKKRNKK
IFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgagctggatcgcttcagcggggaggtggatcccgacttcaagtgcaacctg
tgcaacaaggtgctggaggacccgctgaccaccccgtgcggacacgtcttctgcgcgggc
tgcgtgctgccctgggtggtgcagcagggcagctgccccgtcaactgccagcgcatctcc
accaaggagctcaaccacgtcctgcccctcaagagcctcatcctcaagctggacatcaag
tgcgacaaccacgcgcggggctgcgaggcggtggtgccgctgcagcagctgggcgagcac
gccgagacctgcgacttctcgccggccaagtgccgcaaccgcggctgccgccaggtgctc
aacctgcgcgacgtggaagcgcacatgcgggagcgctgcgaggcgcggcccgcggggctg
tgcgagcagggctgcgggctgctgctgacccacggcgagcgccgggccggcggccacggc
tgcctgcgggcgctgcgcgcacacggggccgcgctgcaggcgcgggcggccgcgctggag
aaggcgctgaagaaggaggcgctgcgcgccggcaagcgggagcagtcgctgctgtcgcgg
ctggcggcggcgcagctggagctgcaggtgacggcgctgcgctaccagaagcgcttcacg
cagtacagcgcccgtctggacgcgctggcccgtgcccgcgcagcttcccccggcaagggt
gaagaaactaaagcactgactctggtccttcatcgggactctggatctcttggatttaat
attattggtggccggccatgcgtggacaatcaggatggctcatccagcgaaggaattttt
gtatccaagatagttgacactgggcctgctgctaaggaaggagggctgcaaatccacgac
aggatcattgaggtcaatgggaaggatttatccaaagccacgcacgagcaggcagtggag
gcgttcaaaaccgccaaggagcccatcgtggtgcaggtgctgcggagggccccgcgcgcc
aaggcccacgagccgcagctggtggacgcggccacccagaccgacatcaccttcgagcac
atcatggccctcagcaagatgggctcgcccagcccgcccgtccccggcctggacccctac
ctgctgcccgaagatcatccatctgtgcatgaatactatgacccaaatgactacatggga
ggaattcatcaagaaatggaccgggatgagttggaattagaggaagtggatttacacaga
gtgaacagccaggacaagcttggcctcactgtctgttacagaacggatgatgaagatgac
atgggtatttatgtgagtgagattgatcccaacagcatcgcggcgaaggacgggcggctg
cgagaaggggatcgcattatccagatcaatggcatcgaggtgcagaaccgagaggaagct
gtggcactcctctccagtgaggagagcaagaatatctccttgcttgtggcaaggccagaa
attcagctggatgagggatggatggatgatgacagaaatgattttctggatgacttgcac
atggacatgttagaggaacagcaccaccaggcaatgcaatttactgccagcatgcttcag
cagaagaagcacgaggaggatggaggcaccacagacacagccacgattttgtccaaccag
cacgagaaggacagcggtgtggggcgcacggacgacagcactcgcaacgacgagagctcc
gagcaggagaacaacggggacgatcacaccacctcctccaacaccttggggagccagaag
aagctgacctacagccacgacaccctgggaagtggggacatgcagttcagcaacgagtcc
ttcatctcagctgactgcaccgacgtcgacttcctcggcatccccgtggatgagtgcgag
cggttccgggagctgctggagctgaagtgccaggtgaagtctgccaacccctacagtctg
tactaccacaacagcagcctggagatgagcaaaagcgaccaagagagcgtcgacagagag
ctggagatgctcaacgaggagctgcgcaacatcgagctggagtgcctgaacatcgtgaga
gcgcacaaaatgcagcagctgaaggagcagtaccgggagccctggatgctgcacaacagc
ggcttccgaaactacaacaccagcatcgacgtccgcaggcacgagctgtcggacatcacc
gagctgcccgagaagtcggacaaggacagctcgagcgcctacaacacgggcgagagctgc
cggagcacgccgctgacgctggagatctcccccgacaattccctgcgcagaacggcggaa
ggcatcagctgtcaagggaacgagggggcagcggcctataatgtctcccaaaagagtttg
tgtgcaggctcagagagccatgaatccaaccctggtaagtgccacgcctctgctaaagag
cctgagcctggcaagcagctggagagcaaggagaggaaaggcagcgacggcagcaaaagc
cccactcatggtcagaagcccctggtgtccccctaccaccactccccctacaaacacgct
cacatccctgcccacgcccagcactaccagagctacatgcagctgatccagcagaaatcc
gccgtggagtacgcacagagccagatgagcctggtgagtatgtgcaaggacttggcctcg
ggccagagcgagcccaggatggagtggaaggtcaaggtcaggagcgacgggacacgctac
atcaccaagaggccggtgagggacaggctgctgagggaacgggccatcaagatcaaggag
gagcgcagcgggatgaccacggatgacgatgccatcagtgagatgaagatgggccggtac
tggagcaaggaggagaggaagcagcacttggtgaaagccaaggagcagaggaggcggcgg
gagttcatgatgcagagcaggttagagtgcttaaaggagcagcaaggcgcagaggagaag
aaggagatgaacatcattgaactgagccacaaaaaaatgatgaagaagagaaataaaaaa
atatttgacaattggatgacaatccaagaactgctaacccacggaacaaagtcaccggac
ggcacgcgggtgtacaattccttcctgtcagtgactactgtataa
DBGET
integrated database retrieval system
