Taeniopygia guttata (zebra finch): 100229654
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Entry
100229654 CDS
T01082
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100229654 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgu03019
]
100229654 (MTREX)
03041 Spliceosome [BR:
tgu03041
]
100229654 (MTREX)
03009 Ribosome biogenesis [BR:
tgu03009
]
100229654 (MTREX)
03016 Transfer RNA biogenesis [BR:
tgu03016
]
100229654 (MTREX)
Enzymes [BR:
tgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100229654 (MTREX)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100229654 (MTREX)
Spliceosome [BR:
tgu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100229654 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
100229654 (MTREX)
Ribosome biogenesis [BR:
tgu03009
]
Eukaryotic type
Pre-60S particles
Helicases
100229654 (MTREX)
Transfer RNA biogenesis [BR:
tgu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100229654 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
100229654
NCBI-ProteinID:
XP_002186759
Ensembl:
ENSTGUG00000002480
LinkDB
All DBs
Position
Z:52372810..52416481
Genome browser
AA seq
1035 aa
AA seq
DB search
MAEAFGDELFSVFEDDAAAAASGTKKSKASPAEGARRPGKRVEEKPSVPAAIVKPKREVE
IDSTENVNLGKKPKLEDVLSEDVNLIDLMPQVKVQSVETVEGCTHEVALPANEEFTGLKP
RTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPRASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVV
YTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGNQKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHCRTIPEIVERVNN
LEAQYNKIVIPNEENVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGD
DYGWGVVVNFSKKSNVKPNSSELDPLYVVEVLLHCSKDSLKNSATESAKPARPDERGEMQ
VVPVLVHLVSAISSVRLYIPKDLRPIDNRQSVLKSVQEVQKRFPDGVPLLDPIDDMGIKD
QGLKKVIQKIEAFEHRMYSHPLHNDPNLETIYKLCEKKAQIAMDIKVAKRELKKARTVQQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGFFNDLSAEQATA
LLSCFVFQEHSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLM
DVVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcttttggggatgagctcttcagcgtgttcgaagatgacgcggccgccgct
gcttctggcaccaagaagagcaaagcgagccccgccgaaggtgccaggaggccgggaaaa
cgagtggaagaaaaaccttcagtaccagcagcaatagtcaagccaaaaagggaagttgag
attgatagtactgaaaatgtcaatttgggaaaaaaacctaaactggaagatgttttatca
gaagatgttaatctgatagatctgatgcctcaagtaaaggtgcagtctgtggaaacggtt
gaaggttgtacacatgaggttgcacttcccgcaaatgaagaattcacaggtctgaagcca
agaactggaaaagctgcaaaagaatatccatttattcttgatgccttccagagggaagct
attctttgtgtagataataaccagtctgtgttggtgtcagctcatacatcagctggtaaa
actgtttgtgctgagtatgcaattgccctggctttgagggaaaagcagcgcgtgatattt
acaagtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcag
gatgttggtttgatgactggggatgtcaccattaatcctagagcgtcttgtttggtaatg
acaactgagatcttgagaagtatgctttacagaggttctgaggttatgcgtgaagttgca
tgggttatttttgatgaaattcactacatgagggatacagaacgtggcgtggtttgggaa
gagactattattttgcttcctgataatgtacattatgtgttcctttctgcaactattcca
aatgcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtggtt
tacactgactatcgacccactccactgcagcactatatatttccagcaggaggagatgga
ctccatctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatg
caagtgcttagagatgctggagacttagcaaaagggaaccagaaaggcaggaaaggagga
acaaaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaa
ccggtgattattttcagcttcagtaagaaagactgtgaagcttacgcacttcagatgaca
aagttagatttcaatacagatgaagaaaaaaaaatggttgaagaagtcttcaataatgca
attgattgtctctcagatgaagacaaaaagcttcctcaggttgaacatgtgcttcccctt
ctgaagcgaggaattggtattcatcatggtggtttgcttcctatcttgaaagaaaccata
gaaatccttttctcagagggcctaataaaggccttatttgcaacagagacgtttgctatg
ggaattaatatgccagccaggactgtgctgtttacaagtgccagtaaatttgatggaaaa
gatttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgcgcaggacgccga
ggtatggatgatagaggaatagtaattctcatggtggatgaaaaaatgagtccaacaatt
ggcaagcagcttttgaagggttcagctgatcccttaaacagtgctttccacctgacatac
aacatggtattgaacttacttcgagtagaggaaattaatcctgaatacatgttagaaaaa
tcattttatcagttccaacattgcagaactattccagaaatagtggaaagagtcaataat
ttggaagcacaatacaacaaaattgtaattcccaatgaagaaaatgtggtgatatactac
agaatccgccagcagcttgcaaaactgggtaaagatattgaagagtatattcacaaacca
aagtactgcttgccctttctacagccaggaagactggtaaaggtgaagaatgaaggtgat
gactacggatggggagtggttgttaatttctctaagaaatcaaatgttaagccaaattcc
agtgaattggacccattgtatgtagttgaagtgctcctgcactgcagcaaagacagtttg
aaaaattctgcaactgagtctgcaaaaccagccagacctgatgagagaggcgagatgcag
gttgttcctgttttggtgcatcttgtctcagctatcagcagtgtccgactctacatacca
aaagacctgaggcctattgataacaggcagagtgtgttaaaatctgtacaggaagtacag
aaacgatttcctgatggagtgcccttactagaccctattgatgacatgggcatcaaagac
caagggttgaaaaaagtaatccaaaaaatagaggcatttgagcacaggatgtattcacat
cctcttcacaatgatccaaacttggaaaccatatacaaactttgtgaaaagaaagcacag
attgctatggatattaaagtggcaaagcgagaactgaagaaagccagaactgtccagcaa
atggatgagctcaaatgccgcaagcgtgttttgagaaggctggggtttgccacgtcttca
gatgttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactc
ctgacagaaatgatgttcaatggtttcttcaatgatttgtctgcagaacaggcaactgca
cttcttagctgtttcgtgtttcaagaacattccagtgaaatgccaaaattgactgagcag
ctggcaggaccacttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtatcagca
gaagcaaaactggaaattgatgaagaaaattatttgaattctttcagacccaacctaatg
gatgttgtgtatacgtgggcaaatggagctaattttgctcacatctgcaaaatgacagat
gtctttgaaggtagcataattcgttgcatgaggcgtctagaagaactgcttcggcagatg
tgccaggctgcaaaagccattgggaacacagaactggaaaataagtttgcagaggggatt
acaaaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
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