Taeniopygia guttata (zebra finch): 100229796
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Entry
100229796 CDS
T01082
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100229796 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgu03019
]
100229796 (BARD1)
04121 Ubiquitin system [BR:
tgu04121
]
100229796 (BARD1)
03036 Chromosome and associated proteins [BR:
tgu03036
]
100229796 (BARD1)
03400 DNA repair and recombination proteins [BR:
tgu03400
]
100229796 (BARD1)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
100229796 (BARD1)
Ubiquitin system [BR:
tgu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
100229796 (BARD1)
Chromosome and associated proteins [BR:
tgu03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
100229796 (BARD1)
DNA repair and recombination proteins [BR:
tgu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
100229796 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_2
Ank_4
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
zf-C3HC4_2
zf-C3HC4
ANK_LRRK2
NIBRIN_BRCT_II
zf-RING_UBOX
zf-rbx1
RTT107_BRCT_5
Siva
zf-RING_10
zf-C3HC4_4
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
100229796
NCBI-ProteinID:
XP_002189072
Ensembl:
ENSTGUG00000002894
UniProt:
H0YXG0
LinkDB
All DBs
Position
7:complement(3048739..3102471)
Genome browser
AA seq
786 aa
AA seq
DB search
MREALRGRSGNQPAPGSPLRPAAPSMAPPGHSWSHTRAALGRLERALSCSRCGGVLREPV
SLGQCEHVFCLSCVGDCVGTECPVCHMPAWVQDAQINRQLDNMIQLCSKLRQLLGADASD
SAEDTSTPADSELEKKSKKEQIKMWFSPRSRKVRCVVNRHQAGTKSNDLGQDTPSVYDFF
PSPPHEKPSKPTKRPTQRQIKKMKEKHLAEINKEWSLEKPEQKRAKEKTPKEKCVTICSQ
PVVLFTEEPESPEEGPQQESVKEADSSSNTEDVEVLPQVESPEKKGNSEVACSARESKEK
NSAEALLSVANEVTPLKRGREQSRLQGTPQPKRARSERGIPGKSGGQADGLESLEGSPIS
PATEKTPVQTSSASKLTDTGMKTRRSAALQAINSPSLSESPSTPSTSKTCSQVTTPLSPS
VLKSPGVNTIARRNYKGETLLHVASIKGDLAAVEQLLKNGADPNVKDNAGWTPLHEACNH
GHREVVELLLQHRALVNTTGYQNDSPLHDAARNGHVAIAELLLLHGASRDAVNIFGLRPV
DYAESKKMKSVLMLPLKNESFSLNQTSEALSSSQPRNGPLGILGSNLSVEQQKLLNKLAT
VLKAQRCTEFNSRVTHLVIPDVPMPTTVKCMMAVLTGCWVLKFEWVQACLQSSAREQEEK
YEVQGGPQRGRLNREQLLPKLFDGCYFYFLGPFKKHQKSDLLELVKAAGGQVLVRQPKPD
SDVTQTINTVSYHAEPTSDQRLCTQYIIYDMASKFQPEKIRQGKVWMAPSSWLIDCVMSF
QLLPVK
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgagggaggcgctgcgcgggcgctcgggcaaccagccggccccaggcagccccctccgc
cccgccgccccctccatggcgccgcccgggcactcctggtctcacacccgcgccgcgctg
gggcggctggagagggcactgagctgctcccgctgcggcggtgtcctgcgggagcccgtg
tccctggggcagtgcgagcacgtcttctgcctgtcctgtgtgggtgactgtgttggcacc
gagtgccccgtgtgccacatgccagcctgggtgcaggacgcacagatcaaccggcagctg
gataacatgatccagctctgcagcaagctgcggcagctcctgggcgccgacgcctcagat
tcagcagaggatacatccacaccagctgactcagagttggaaaaaaagagcaagaaggaa
cagataaagatgtggttcagcccaagaagcaggaaggttcgatgtgttgtgaacagacat
caggctgggactaaaagcaatgaccttggtcaagacacaccttcagtttatgatttcttt
ccttcccctcctcatgaaaagccctccaagccaacaaaaagaccaactcaaagacagatt
aagaagatgaaggagaaacatctagcagaaattaacaaagaatggagcttagagaaacct
gagcagaaaagagccaaggagaagactcccaaggaaaagtgtgtgaccatctgcagtcaa
ccagtagtgctgttcactgaggaaccagagagtcctgaagaaggacctcagcaggagtct
gtgaaggaagctgactccagcagtaatacagaagatgtggaagttctgccacaggtggaa
tccccagagaagaaaggtaacagtgaggttgcgtgctctgcgcgagagagcaaggaaaaa
aatagtgctgaggcattgctgtcagtggcaaatgaagttacacctttgaaacgtggaagg
gagcaatccagacttcagggtactcctcagcctaaaagagcaagaagtgagaggggcatt
cctgggaagtcaggtgggcaggctgatggcttagagtcactggagggctcccccatctcc
ccagccactgaaaagacacccgtccagacttcctctgcatccaaactcactgacactgga
atgaagacaagaagatctgcagcccttcaagcaattaacagtccttcactttcagaatct
ccctctaccccatccacttctaagacttgcagtcaagtaacaacaccactcagtccttct
gtgttgaaatcccctggcgtcaacacaattgccagaagaaattacaagggagagactttg
ctccatgttgcttccatcaagggtgacttagcagctgtggagcagctgctgaaaaatggt
gcagatcccaatgtcaaagataatgctggttggacaccactgcacgaggcgtgtaaccac
gggcacagggaggtggtggagctgctgctgcagcaccgggcgctggtgaacaccacgggc
taccagaacgactccccgctgcacgacgccgccaggaacgggcacgtggccatcgcggag
ctgctgctcctgcacggcgcctcccgggacgctgttaatatatttggtctgcggcctgtg
gactatgcagaaagcaaaaagatgaaatctgtgctaatgttaccgctgaagaatgaatca
ttttcacttaaccagacctctgaggcactgagctccagccagccaagaaatggacccctt
ggtatactggggagcaatcttagtgtggagcagcagaaattgctgaacaaattagcaaca
gtcttgaaggcccagaggtgcactgaatttaatagcagagtaactcatcttgttatccct
gatgttccaatgccaactactgtcaaatgcatgatggctgttctgactggatgttgggtc
ctcaagtttgaatgggttcaagcctgtctgcagagctcagctcgagaacaagaagagaag
tacgaagtccaaggtggcccgcagcgagggcggctcaaccgggagcagctgctgcctaag
ttgtttgatggatgctacttctattttttgggacctttcaaaaagcaccagaagagtgac
ctgctcgagctggtgaaagcagcaggtggccaggtcctggttaggcagcccaagccagac
agtgatgtgacacagaccatcaacacagtgtcctaccatgcagagcccacctctgaccag
aggctctgcactcagtacatcatctatgacatggcttccaagttccagccggagaaaatc
cggcagggcaaggtgtggatggccccctccagctggctcatagactgtgtgatgtcattt
cagcttctgcccgtgaagtga
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