Taeniopygia guttata (zebra finch): 100230085
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Entry
100230085 CDS
T01082
Symbol
PCDH9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
100230085 (PCDH9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tgu01009
]
100230085 (PCDH9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tgu04515
]
100230085 (PCDH9)
Protein phosphatases and associated proteins [BR:
tgu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100230085 (PCDH9)
Cell adhesion molecules [BR:
tgu04515
]
Cadherins
Protocadherins
100230085 (PCDH9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
RET_CLD1
Big_9
MAP17
V_ATPase_I
RCR
EphA2_TM
DUF6249
7tm_3
DUF6377
Motif
Other DBs
NCBI-GeneID:
100230085
NCBI-ProteinID:
XP_030142615
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All DBs
Position
1:50130780..50800089
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AA seq
1225 aa
AA seq
DB search
MDLRDFYLLAALIACLKLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSNTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKESQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RFFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPINTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFSQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSSYTFDVKAVDGGQPPRSSTAK
VTINVMDVNDNSPVVIYPPSNTSFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPTPNDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQTIGRFDWGTAPPSTFKPNSPDLAKHYKSASPQSAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQALNFGDMP
KYLWEIWVPDKPWVSQRRVTFHLPDGSQESCSDSGLGDHEPVGGGTLISHPLPLVQPQDE
FYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPSLGPYQ
QPKSPLSTFAPQKEWVKKDKLVNGHTLTRTWKEDSNRNQFSDRKQYGSSEGHFNTGNHMT
DIPLANLKSYKQASGSVESPKEHQL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggatttttacctgttggccgctttgattgcctgtttaaagctggattct
gctatagctcaagaacttatttacactattagagaggagctgcctgaaaacgtgcccata
gggaacataccaaaggacctgaacatttcacatatcaatgctgccacagggaccagtgcc
agccttgtctacagactggtgtctaaagcaggggatgcacctctggtcaaagtgtccagt
aacacaggggaaatctttacaacatctaacagaatagacagagaaaaactatgtgctgga
gcttcctatgcagaagaaaatgaatgtttctttgaacttgaagtagtgattctccccaat
gacttttttaggctgatcaaaataaaaatcattgtaaaggatactaatgacaatgcgcct
atgtttccatcccctgtcatcaatatctccatcccagaaaacactctgatcaacagtcgc
tttccaatcccatcagcaacagatcctgacacaggtttcaatggtgtgcagcactatgag
ttgttaaatgggcagagtgtctttggactggatattgtagaaactccagaaggggagaaa
tggcctcaactgattgtgcagcagaacttggacagagagcaaaaggacacctacgtgatg
aaaatcaaagtagaggatggaggtaccccccagaaatccagcacagctatcctgcaagtc
acagtaagtgatgtcaatgataacaggccagtctttaaagagagtcaagtagaggtccat
ataccagagaatgcccctgtaggcacctctgtaattcagcttcatgctacagatgctgat
ataggaagcaatgcagaaatcagatatatttttggtgcccaagtcgcccctgcaaccaaa
agattttttgctttaaacaacaccacagggctgattacagttcagaggtccttagatcga
gaagagactgctattcacaaagtgacagtgctggctagtgatggtagctctacaccagct
cgggcaactgtcaccatcaatgtcactgatgtaaatgataaccctcctaacatagacctc
aggtacataataagtcccatcaatggcacagtgtacttatctgagaaagatcccatcaat
acaaagattgccctaattacggtttcagataaggacactgatgtgaatggcaaagtgatc
tgtttcattgagagagaagtccccttccacctgaaagcagtttacgacaaccagtatctg
ttagagacctcttccttgttggactatgagggcaccaaagaatttagctttaaaattgtg
gcttctgattctggcaagcccagtttgaaccagactgccctggtaagagttaagctggag
gatgaaaatgacaaccctccgattttcagccagcctgtaattgagctgtcagtttctgaa
aacaaccggcgtggtctatacttaacaactattagtgccacagatgaagacagtgggaaa
aatgcagacattgtttatcagcttggtcctaatgcctcctttttcgatctggatcgaaag
acaggagtgttgacagcctccagagtttttgacagagaagagcaagaacgtttcattttc
actgttacggcccgagataatggcacccctcctttgcagagtcaagcggctgtaattgtt
actgtgttggacgaaaatgacaacagtcccaaatttactcataatcatttccagtttttc
gtatcagagaacttaccaaagtatagcacagtgggggtgatcacagtgactgatgcagat
gccggggaaaataaagcagtgaccctttccatcctgaatgacaatgaaaactttgtgctg
gatccgtactctggagttataaagtccaacgtttcttttgatagagaacagcagagctct
tacacctttgatgttaaggcagtggatggagggcaacctcctcgctcttcgacagcaaaa
gtaacaataaacgtgatggatgttaatgataacagtcctgttgtcatctacccaccttct
aatacttcttttaagttagtgccactctcagcaattccaggatcggtggtagctgaagtc
tttgctgtggatatagacactggcatgaatgctgagctgaagtacacgattgtaagcggc
aataacaagggtttgtttcggattgatccagtgacaggaaatatcacattggaagaaaag
ccaactcctaatgacgtggggctgcatcgcttagttgtcaacataagtgatttgggttat
cccaaatccctgcatactcttgttcttgtatttttatatgtaaatgatactgctggaaat
gcctcttatatttatgacttgatacgcaggactatggaaacacctttggatcggaacata
ggggacagtagtcaaccctaccaaaatgaggactatctcacaatcatgattgcaattgtg
gctggtgccatggttgtcatagtggtgatatttgtcacggttcttgttcgctgtcgacat
gcgtccagattcaaagctgcccagaggagcaagcaaggtgctgagtggatgtctcccaat
caggaaaacaagcaaaacaagaaaaagaaaaggaagaaaaggaaatctccaaagagctcc
cttttgaactttgtgaccattgaggagtccaaacctgatgatgcagttcatgaacctatc
aacgggacaataagccttccagcagagctggaggagcaaactataggaagatttgattgg
ggcacagcaccaccatcaacctttaagcctaacagtcctgatcttgccaagcattacaaa
tctgcctctccgcagtctgcttttcatctcaaacctgacactccagtttcagtgaaaaag
caccatgtgattcaggaactcccgttggacaacacctttgttggtggttgtgacaccctt
tccaaacgctcttccactagttcagatcacttcagtgcctcagagtgcagttcccaagga
ggcttcaagacaaagggccccttacacaccagacaggcactgaattttggagatatgccg
aagtacttgtgggagatttgggtacctgacaaaccatgggtgtcccagcgccgtgttaca
tttcacctccccgatggctcccaggaaagctgcagtgacagtggtctgggagaccacgag
ccagtgggtggtggaaccctgatctcacaccctctccctctggttcagccgcaggacgaa
ttctatgaccaggcttcaccggacaagaggactgaagctgatggcaattctgaccccaac
tcggatgggcctcttggtccacgaggattagctgaagctacagagatgtgtactcaagaa
tgcctggttttgggtcactcagacaactgttggatgcctcctagcttgggcccataccaa
cagccaaagtctcctctctccacctttgcacctcagaaggaatgggttaagaaggacaaa
ctagttaatggacacacattgaccaggacctggaaagaagatagcaacagaaaccagttc
agtgatcgaaagcagtatggttccagtgagggccatttcaacactggcaaccacatgact
gacattcctctggccaacttgaagtcttataaacaggcctcgggatctgtggagagtcca
aaggagcaccaactataa
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integrated database retrieval system
