Taeniopygia guttata (zebra finch): 100230227
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Entry
100230227 CDS
T01082
Symbol
TRMT13
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 homolog
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tgu03016
]
100230227 (TRMT13)
Enzymes [BR:
tgu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
100230227 (TRMT13)
Transfer RNA biogenesis [BR:
tgu03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
100230227 (TRMT13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
zf-U11-48K
Methyltransf_32
OrgC
DUF7077
Motif
Other DBs
NCBI-GeneID:
100230227
NCBI-ProteinID:
XP_002188173
Ensembl:
ENSTGUG00000005253
UniProt:
H0Z4C3
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All DBs
Position
8:18832696..18838519
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AA seq
478 aa
AA seq
DB search
MAARGPPGAAMPAPGQEPEPGRCAHFVLRKRRFCRMIPAPGRRFCGEHGHEEEQNDRKRI
PCPLDPKHTVYEDQLQKHLKKCNSREKPKPVYFVQDINAGLKDVVEIPEKQVPLSSLSLE
ELQNLIIKLKKASNGLELHLKEQILSHQALQEALSDPKNGESAFKHLKQQASILGNMEKL
HLLGPGRCFVEFGAGRGKLSHWVDIALENVENVQFLLVERATTRFKVDGKHKRRDSIFER
LQVDIQHLCLNKVPILEKKKLPVVGIGKHLCGAATDLALRCLVESYTTSCDGEDEEPAPK
RCRAAQTEVAPHKSAGNESITEDRKPVAGIVIALCCHHKCDWTHYVGREFFKSIGLGPVE
FHYFQRMSSWATCGMQETTSKVSTSEDSQDQTNDTEEHEHTLSRTASGSDTLQGILSVEE
RKEIGCLCKRLIDHGRIEYLQQQGYKAALQYYTEPAVSLENVLLTAVPNPPLIPEPTV
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgggggccgccgggagcggcgatgccggcgccggggcaggagccggagccg
gggcgctgcgctcacttcgtgctgaggaagaggcgcttctgcaggatgatcccggcgccc
ggcaggcgcttctgcggcgagcacgggcacgaagaggaacaaaatgacagaaaaagaatt
ccgtgccctcttgatccaaaacacactgtgtatgaagaccaactacaaaagcatttaaaa
aaatgtaactcaagagagaagccaaagcctgtctactttgttcaagatattaatgctggt
ttaaaagatgtagtagaaataccagaaaaacaagttcctctatcttctttatctcttgaa
gagctgcagaatttaattataaagttgaaaaaagcaagtaatggcctggaacttcatctt
aaggaacaaatactgtcccaccaggctttacaagaagccttaagtgacccaaagaatggg
gaatctgctttcaaacacctgaaacaacaggcttctattttaggtaacatggaaaaattg
catttacttggtccaggaaggtgttttgttgagtttggagctgggcgaggaaagctgtct
cattgggttgatattgccttagagaatgttgaaaatgttcagtttttgcttgtggaaagg
gcaaccacaagattcaaggtggatggaaaacacaaaaggagagattctatatttgagagg
cttcaagtagacattcagcacttatgtttaaataaggtacctattttggagaagaaaaaa
ctaccagtggtaggaattgggaagcatttgtgtggtgctgcaacagatcttgctttgaga
tgcttggttgaaagttacaccactagctgtgatggagaagatgaagagcctgcaccaaaa
cgctgcagggctgctcagacagaggtggctcctcacaaatctgctggtaatgaaagcatc
acagaagaccgtaaacctgtagctggaattgttattgctctgtgttgccatcacaagtgt
gactggacccattatgtaggcagagagttctttaaatcaataggactgggaccagtagaa
ttccattattttcagagaatgagtagttgggccacttgtggcatgcaagaaaccacaagc
aaagtttctacaagtgaagacagtcaagatcaaactaatgacacagaagaacatgagcac
accctcagcaggacagcaagtggttctgatactttacaagggatactgagtgttgaggag
cggaaggagatcggttgcctctgcaaacggctgattgatcacggacggattgagtattta
cagcagcaaggatacaaggctgcactgcagtattatacagagcctgctgtgtccttggag
aatgtcctgttgacagctgtcccaaatcctcctttgataccagagccaactgtatga
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