Taeniopygia guttata (zebra finch): 100230975
Help
Entry
100230975 CDS
T01082
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100230975 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tgu03041
]
100230975 (SF3B1)
03036 Chromosome and associated proteins [BR:
tgu03036
]
100230975 (SF3B1)
Spliceosome [BR:
tgu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100230975 (SF3B1)
Complex B
100230975 (SF3B1)
Complex C
U2 SnRNP specific factors
100230975 (SF3B1)
Chromosome and associated proteins [BR:
tgu03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
100230975 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
100230975
NCBI-ProteinID:
XP_002192675
Ensembl:
ENSTGUG00000010553
UniProt:
A0A674GB95
LinkDB
All DBs
Position
7:22667059..22690549
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKINARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatatcgaagcacaaattcgagaaattcaagga
aaaaagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatattatgat
caagaaatttatggtggtagtgacagcagatttgctggatatgtcacttctattgcagct
actgaattggaagatgatgatgatgactatccttccacaagtctgcttggccagaagaag
ccaggataccatgctccagtggcattgcttaatgacataccacaatctactgaacagtat
gatccttttgcagagcaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
actccagaccctaaaataaatgccagaacatacatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagctgcttctcagccaccttcaaaacgcaaacggcgttgggatcag
acagctgatcagactcctggtgctacacctaagaaattgtccagttgggatcaagcagag
actcctggacacacgccatctctgcgatgggatgaaactccaggccgtgcaaagggtagc
gaaactccaggtgccaccccaggctcaaaaatctgggatccaactcccagtcatacacca
gcaggagctgcaacacccggccgggacacgcctggtcacgcaacaccaggtcatggaggt
gccacttccagtgcacggaaaaatcgatgggatgaaacccccaaaacagaaagagatact
ccaggccatggcagtggctgggctgagacacctcgtacagatagaggtggtgactccatt
ggtgagacaccaaccccaggagcaagcaaaaggaagtcacgctgggatgaaacacccgcg
agccagatgggtggtagcactcctgttctgacacctggcaaaacacccattggtacacca
gctatgaacatggcaacccctacaccaggtcacatcatgagcatgacccctgaacagctg
caggcttggcgctgggagagggaaattgatgagagaaacagaccactttctgatgaggaa
ttggatgcgatgtttcctgaaggatataaggttctcccacccccagctggttacgtgccc
atccgtactcctgctcggaagctcacagcgactccgacgcccctggggggtatgacaggg
ttccacatgcagacagaggaccgcactatgaagagtgttaatgaccagccatctggcaac
ctgccattcctgaaaccagatgatatccagtacttcgacaagctgctggttgatgttgat
gaatcgactctgagtcctgaggaacagaaagagagaaaaataatgaaattacttctgaaa
ataaagaatggcacacctcccatgcgaaaggctgcgttgaggcaaattacagataaagct
cgggaatttggagcagggccgctgttcaatcagattctgcctctgctgatgtcaccaaca
cttgaagatcaggaacgtcacttgcttgtcaaagtcatcgacagaattctttacaaactg
gatgacttggtccgaccatacgtacacaagatccttgtcgtcattgaaccactgctgatt
gatgaagactactatgctagagtggaaggcagagaaattatttcaaacttggctaaggct
gcaggtttggcaacaatgatctccacaatgagacctgatattgataacatggatgaatat
gtcagaaatacaacagctcgagcctttgctgttgttgcatctgctctgggcattccttct
ttgttacccttcctgaaagctgtctgtaaaagcaagaaatcctggcaggccaggcacact
ggcatcaagattgtacagcagattgctattcttatgggttgtgctatcctgcctcatctc
aggagcttggttgaaattattgagcatgggctggtggatgagcagcagaaagttcgcacc
atcagtgctttggccattgctgctttggctgaggcagccactccctatggtattgagtca
tttgattctgtcctgaagcccttgtggaagggtatacgtcagcatagaggaaagggtttg
gctgcatttttgaaggcgattggttacctgattccactcatggatgccgagtatgcaaac
tactacaccagagaagtcatgctgattcttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtgttgaaggtggtaaagcagtgttgtggtacagatggtgttgaagca
aactacattaaaacggaaatcttgccacccttcttcaaacatttctggcagcacagaatg
gcactggacagaagaaattacagacagttggttgatacaactgtggagctggcaaataaa
gttggagcagcagaaattatttctagaattgtggatgatctgaaagatgaggctgagcag
tacagaaagatggtcatggaaacaattgagaaaataatggggaatctgggggcagcagac
atcgatcacaaactggaagagcagctcattgatggcattttgtacgccttccaggaacag
acaacagaggattctgtgatgctgaatggttttggtaccgtggttaatgctctaggcaaa
agagtgaaaccctacttgccacagatctgtggtacagttttgtggcgtttgaataacaaa
tcagccaaagtcaggcagcaggccgctgacctgatctctcgtactgctgttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgttttgtatgagtaccttggt
gaagaatatcctgaagtactgggcagcatacttggagcgcttaaggctattgtgaatgtt
ataggtatgcacaagatgacaccaccaatcaaagacctgctgccgcggttgacacctatt
ttgaagaacaggcatgagaaagtgcaggaaaattgtattgatcttgttggacgtattgca
gacagaggtgcagagtatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gaattattaaaagctcacaagaaagctatcagaagagccacagtgaacacttttggttat
attgcaaaagctattggacctcacgatgtattggccacactgctaaacaatttgaaagta
caggaaaggcagaacagagtatgtactacagtagcaattgctattgtggctgaaacatgc
tcacctttcacagtgctgcctgcactcatgaatgagtacagagttccagaactgaatgtc
cagaatggtgtgttaaaatctctttctttcctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagggatctggta
cacagacaaacagccagtgctgtggtgcagcacatgtcccttggtgtttatgggttcggc
tgtgaagattctcttaatcacttgttaaattacgtgtggcccaatgtgtttgaaacctct
cctcacgtcatccaggcagttatgggggctctggagggcctcagagttgctattgggccc
tgcaggatgttacagtactgtttacagggtttgtttcaccctgccagaaaagtcagagat
gtttattggaagatctacaattcaatctacattggatcacaggatgctctgatagcacat
tatccaagaatctataatgatgaaaagaacacctatattcgttatgaacttgattacatc
ttataa
DBGET
integrated database retrieval system
