Taeniopygia guttata (zebra finch): 100230990
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Entry
100230990 CDS
T01082
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03030
DNA replication
tgu03420
Nucleotide excision repair
tgu03430
Mismatch repair
tgu03440
Homologous recombination
tgu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100230990 (RPA1)
03420 Nucleotide excision repair
100230990 (RPA1)
03430 Mismatch repair
100230990 (RPA1)
03440 Homologous recombination
100230990 (RPA1)
03460 Fanconi anemia pathway
100230990 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tgu03000
]
100230990 (RPA1)
03032 DNA replication proteins [BR:
tgu03032
]
100230990 (RPA1)
03400 DNA repair and recombination proteins [BR:
tgu03400
]
100230990 (RPA1)
Transcription factors [BR:
tgu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100230990 (RPA1)
DNA replication proteins [BR:
tgu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100230990 (RPA1)
DNA repair and recombination proteins [BR:
tgu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100230990 (RPA1)
MMR (mismatch excision repair)
100230990 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
100230990 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
IBR
Motif
Other DBs
NCBI-GeneID:
100230990
NCBI-ProteinID:
XP_002197483
Ensembl:
ENSTGUG00000005775
UniProt:
H0Z5X0
LinkDB
All DBs
Position
19:complement(4595882..4618831)
Genome browser
AA seq
613 aa
AA seq
DB search
MSGRLSEGAIAAIMQGEEVSKPVLQVINTRAIATGTGPPRYRVLMSDGVNTLSSFMLATQ
LNSLVEEERLSARCICQVNRFIVNSLKDGRRVVILMDVTVLQTADQVGGPIGNPQPYNEG
QGQRSAAPAGNLAASKPQQQNGNLSGAGPAAPKYHAPSNQFGKASAPSALKTPGGSQIKV
VPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQADK
FFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFTNETSVVPCDDAQHLPSVQFDFVS
ISDLENTPKDSIVDVIGICKSYEDVTKIVVKANNREVSKRNVHLMDTSGKLVTATLWGNE
AEQFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVINPDSPEAFKLRGWFDSEGQLLEC
ASISDVRGGPAAGANTNWKTLFEAKAENLGQGDKADYFSCVGTIVHLRKENCMYQACPSQ
DCNKKVIDQQNGLYRCEKCDREFPNFKYRLMLLVTIADCLEYQWVTCFQDTAEIILGQNA
AFLGELKEKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAMDVKPVNYREYSK
RLIANIRRNAQLG
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggcggctgagcgaaggggccatcgcggccataatgcaaggggaggaagtctcc
aagcccgtgctgcaagtcatcaatacacgggctattgccacaggaactgggcccccacgt
taccgagtgctgatgagtgatggggtgaacaccctctcctcattcatgttggcaacacag
ctgaactccctggtggaagaggaacgcttgtcagcccggtgcatttgccaggttaacaga
ttcattgtcaacagcctgaaagatggaaggagggtggtgatcctgatggatgtaactgtc
ctgcagactgctgatcaggttggtgggcctattggcaatccccagccatacaatgaggga
caagggcaacgttctgcagctccagcaggaaatctagcagccagcaaaccacagcaacaa
aatggcaatttgtctggagcaggtcctgctgctcccaagtaccacgctccctccaaccag
tttggaaaagcgagtgctcccagtgccctgaagacacctgggggctctcagatcaaagtg
gtgccaattgccagcttgaatccataccagtccaagtggaccatttgtgctcgtgttacg
cagaaaggtcagatccgcacgtggagcaactctcgtggggaaggaaagctcttttccata
gagctggttgatgaaagtggtgagattagagctactgcattcaatgatcaagcagacaag
ttctttccactcattgaattgaacaaggtatattattttaccaaaggcaatttgaagact
gctaacaagcaatatacagctgttaagaatgactatgagattacattcactaatgagact
tcagttgtgccctgtgatgatgcccagcatcttccatctgttcagtttgattttgtatcc
atctctgacttggagaacacacccaaagactcgattgtcgatgtaattggaatttgcaag
agctatgaagatgtcactaaaattgtagtgaaagctaacaatagggaggtttcaaagagg
aatgtgcatctgatggatacatcagggaaactggtgacagctacactgtggggaaatgag
gctgaacagtttgatggttccagacaacctgtgattgccatcaaaggagcccgtgtgtct
gactttggtggcagaagcttgtctgtcctgtcctccagcacagttgtcatcaaccctgat
agcccagaggctttcaagctccgaggatggtttgactctgaggggcagcttctggaatgt
gcctccatctctgatgtgaggggtgggccagcagctggagcaaataccaattggaaaact
ttgtttgaagccaaagctgagaacttgggacagggagataaggcagattattttagctgt
gtgggcacaattgtacatctgcgcaaagagaactgcatgtaccaggcatgtccctctcag
gattgcaacaagaaagtgatagaccagcaaaacggactttaccgctgcgagaagtgtgac
cgcgaattccccaacttcaagtaccgcctgatgctgctggtgaccattgcagactgtctg
gaatatcagtgggtgacttgttttcaagacacagcagaaataattcttgggcaaaatgca
gctttcctgggagaactgaaggaaaagaacgagcaggcttttgaagaagtgttccaaaat
gcaaacttcaacacctacgagttcaggatccgggtgaaactggagacttacaacgatgaa
tctcgtattaaggccacagcaatggacgtcaaacccgtgaactacagagaatacagcaag
agattgattgccaacatcaggagaaatgctcagctggggtga
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