KEGG   Taeniopygia guttata (zebra finch): 100231971
Entry
100231971         CDS       T01082                                 
Symbol
RFC2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
tgu03030  DNA replication
tgu03410  Base excision repair
tgu03420  Nucleotide excision repair
tgu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100231971 (RFC2)
   03410 Base excision repair
    100231971 (RFC2)
   03420 Nucleotide excision repair
    100231971 (RFC2)
   03430 Mismatch repair
    100231971 (RFC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tgu03032]
    100231971 (RFC2)
   03036 Chromosome and associated proteins [BR:tgu03036]
    100231971 (RFC2)
   03400 DNA repair and recombination proteins [BR:tgu03400]
    100231971 (RFC2)
DNA replication proteins [BR:tgu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    100231971 (RFC2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    100231971 (RFC2)
Chromosome and associated proteins [BR:tgu03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    100231971 (RFC2)
DNA repair and recombination proteins [BR:tgu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     100231971 (RFC2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    100231971 (RFC2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 AAA_14 AAA_16 RCF1-5-like_lid Viral_helicase1 Mg_chelatase AAA_24 Rad17 AAA_11 RuvB_N AAA_assoc_2 nSTAND3 DNAX_ATPase_lid AAA_19 MipZ AAA_18 AAA_5 AAA_28 ABC_tran AAA_30 AAA_25 AAA_23 NTPase_1 MeaB RNA_helicase SLFN-g3_helicase FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 100231971
NCBI-ProteinID: XP_030143854
UniProt: H0Z0B5
LinkDB
Position
19:complement(7506337..7514184)
AA seq 356 aa
MDVDMEEDEKAGPSAGEKRAPTDPAGAAPGGGSGHYELPWVEKYRPMKLSEIVGNEDTVS
RLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRN
KIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKII
EPIQSRCAVLRYTKLTDAQILARLLKIVEKEDVAYTDDGLEAIIFTAQGDMRQALNNLQS
TYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEAYKILAHLWRLGYSPEDVIGN
IFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTAAPAAS
NT seq 1071 nt   +upstreamnt  +downstreamnt
atggacgtggatatggaggaggacgagaaggccgggccgtcggcaggagagaagcgggca
cccaccgaccccgcgggggctgcgcccggcggtggcagcggccactacgagctgccctgg
gtggaaaaatacagacccatgaaactgtctgaaatagttggaaatgaagatactgtgagc
aggttggaggtctttgcaaaagaggggaatgtaccaaatattataattgctggccctcca
ggaacaggtaaaaccaccagtatcctgtgtttggctcgtgctctccttggtcctgcgtta
aaggatgctgtgctggagctgaatgcctcaaatgacagaggcattgatgtcgtaagaaac
aaaatcaaaatgtttgcccagcaaaaggtcacacttccaaaaggtcggcataaaataatc
atccttgatgaagcagacagcatgacagatggagcacagcaagccttgagaagaacaatg
gaaatttattccaaaacaacacgcttcgcactggcgtgcaatgcctctgacaaaatcata
gaacctattcagtctcgctgtgcagtgctgcgttacaccaagctgacagatgcacaaata
cttgccaggctactgaaaattgtggagaaagaggatgtagcatatacagatgatggacta
gaagccattatcttcacagcccaaggtgatatgagacaggcattaaacaacttgcagtcc
acatactctggatttggctttataaatagtgaaaatgtctttaaggtatgtgatgagcct
catcctctgttggtgaaggaaatgatacaacactgcataaatgcaaatattgatgaagca
tacaagattcttgcccacctgtggcgccttggatactctccagaagatgtcattggcaat
atcttccgtgtgtgtaagacatttcaaatgccagaatatctgaaactggaatttatcaag
gaaattgggtacacccacatgaagatagcagaaggtgtgaactccctgttacaaatggct
gggctgctggcccgcctgtgccagaagactgcagcccctgcagccagctag

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