Taeniopygia guttata (zebra finch): 100232188
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Entry
100232188 CDS
T01082
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion protein 1 isoform X1
KO
K06527
vascular cell adhesion molecule 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
100232188 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tgu04515
]
100232188 (VCAM1)
04090 CD molecules [BR:
tgu04090
]
100232188 (VCAM1)
04091 Lectins [BR:
tgu04091
]
100232188 (VCAM1)
Cell adhesion molecules [BR:
tgu04515
]
Immunoglobulin superfamily
VCAM
100232188 (VCAM1)
CD molecules [BR:
tgu04090
]
Proteins
100232188 (VCAM1)
Lectins [BR:
tgu04091
]
I-type lectins (Siglecs)
100232188 (VCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C2-set
C2-set_2
Ig_4
C1-set
Ig_6
Ig_C17orf99
ICAM_N
V-set_CD47
ICAM1_3_5_D2
C2-set_3
Motif
Other DBs
NCBI-GeneID:
100232188
NCBI-ProteinID:
XP_030134524
UniProt:
H0Z3W7
LinkDB
All DBs
Position
8:complement(18890474..18904312)
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AA seq
542 aa
AA seq
DB search
MFKEMGRTSQAVIVILCVLRTVKAFEMEIIPAERIVAQIGDALILTCNTTGCASPSFSWR
TQMDSPLGGKVSNHRTYSTLTINPVSIVNSHSYLCTVICDEREKKEKSVKVELYSFPSDP
IIEISPSLVAGEPATVICKIPDVYPSDHLEVLLKKDEHVLHEKYFLEDDSTNTETKIVTY
TFHPMAEDAGKEITCVARLPIADMDFEPKERTSSQKLNANFGPQNTVITASPGNSAMEGD
SLNLTCVTQSNPPAQIVWSKYLAEENVQHLIKNNVLSIPHVHFNDSGLYICEVINLVTNK
TEKASVDIIIQGAPVIKKLSIEPSTTVQEGENVFIQCSAESNPPPKIILRRKSDNADIES
YSARSVLRLPSVMFQNGGDYECVAENKFGNSKSEITLNVKYGPKNTMITVFPTAALKEGE
TVTMKCTSSGNPSPVISWKKKKATGESEKISKNATITIPNLKSQDLGLYECEAYNQFGKE
EKAVELYIQARLEEPDQMILLVIAFSSVAAVVVPAVAILIYVSRQAKINGSYSLVKALRL
KV
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaagagatgggaagaacaagccaggccgtgatagtaattttgtgtgtgttaaga
actgttaaagcttttgaaatggaaattatacctgctgagagaatagtagcacagattgga
gatgcactcatactcacatgcaatactactggctgtgcatcaccaagtttttcctggaga
acacagatggacagcccccttggaggaaaagtcagcaaccacaggacatattctacgttg
actattaatccagttagcattgtgaactctcattcttatctttgtactgtcatatgtgat
gagagagagaaaaaggagaagagtgtcaaagttgaactttactctttccctagtgatcct
atcattgagatcagcccatccttagttgctggagaaccagccactgtcatctgtaaaatt
cctgatgtatatccttctgatcatctggaagttctcctaaagaaagatgaacatgttctt
catgagaaatattttttggaagatgacagcacaaatacagagaccaaaattgtgacatat
acatttcatcccatggctgaagatgctgggaaagagattacctgtgtggccaggctacca
attgctgatatggattttgagcccaaagaaagaacatcttctcagaaacttaatgcaaat
tttggtccacaaaatactgtcattactgcatctccaggcaactcagcaatggaaggagac
tctctgaacctcacttgtgtgactcagagtaacccgccagcacaaatagtttggagtaaa
tatttggctgaagaaaacgttcagcatctgataaaaaacaatgttctttctattccccat
gtccatttcaatgattcaggactgtacatctgtgaagtaattaatctggtaactaataaa
acagagaaagcatctgtggacattattatacaaggtgctccagtcattaaaaaactctcc
attgaaccttctacaacagttcaggagggagaaaatgttttcatacaatgttctgctgaa
agtaaccctcctcccaagattattttaaggagaaaatctgacaatgcagacatagagtct
tacagtgccaggagtgttcttcgtcttccatctgtgatgttccaaaatggtggagactat
gaatgtgtagcagaaaataaatttgggaacagtaaaagtgaaatcacacttaatgtgaaa
tatggaccaaagaatacaatgatcactgttttccctactgctgctcttaaagaaggagaa
actgtgacaatgaaatgtactagttctggtaatccatctcctgtgatctcctggaagaaa
aagaaggccactggagagtctgagaaaatttctaaaaatgcaactataactatacctaac
ttgaaaagtcaagatctggggctttatgaatgtgaagcttataatcaatttggcaaggaa
gaaaaagctgtggaattatatattcaagcaagattggaagaaccagatcagatgatacta
ttggttattgcattctcatctgtagcagcagtagtggtacctgcagttgcaattttgatc
tatgtgtcaagacaagcaaagatcaatggatcctacagtcttgtaaaagcactcaggttg
aaagtgtga
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