Taeniopygia guttata (zebra finch): 105759501
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Entry
105759501 CDS
T01082
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
105759501 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tgu04131
]
105759501 (VPS8)
Membrane trafficking [BR:
tgu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
105759501 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
Beta-prop_WDR36-Utp21_1st
zf-RING_Vps41
WD40_CDC20-Fz
Clathrin
zf-RING_11
zf_RING_Vps8_fungal
TPR_Vps41
zf-RING_2
zf-RING_UBOX
Beta-prop_WDR5
Beta-prop_HPS5
Beta-prop_WDR3_1st
WDR55
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
105759501
NCBI-ProteinID:
XP_030136262
LinkDB
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Position
9:complement(5921839..5988699)
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AA seq
1395 aa
AA seq
DB search
MAAAPEPAEAEPCPEPPAHRLSVAELDRELDCRSELIDDKEFDIPQVDTPPTLESILNET
DDEEESFILEDPFLLNIDNTDTHSYDTSSVASSDSGDRTHLKRKKKLPDSLSLHGSVIRL
SLLKGISAQVASAADKVDAGLPTAIAASNLIAVGTSHGLALIFGKDQNQALRLCLGSTAV
GAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDD
PTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKADLRDHPITQY
SLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNSVNPMLAFCRGD
VVYFLLVKRDDSGAIHVTKQRQLHLHYDLINFTWVNSRTAVLLDSVEKLHVIDRQTQEEL
ETIEISEVQLVYNSSHFKSLATGGNVSEALALVGEKACYQSISSCGGQVFYLGTKSVHVL
TLRSWRERVDHLLKQERLTDALALAWSFYEGKAKAVVGLTGDTSKRKAVIADRMVEILLH
YTDRTLKKCPDQGKIQVMEQHFQDVVPVIVDYCLLLQRMDLLFNQIYDKMSENSVAKGIF
LECLEPYILSDKLMGITAQVMKDLLLHFQDKNRLENLEACIVHMDITSLDIQQVVLLCWE
NRLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEQVVMGNKLLVYISCCLAG
RAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEGSVDEEVYPYVRTLLHFDTREFLNVLALT
FEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPNNTLFVNRTL
FDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIQMAEKAEFYQICEFMYER
QLRYDKIIGCYLRDPLRKEEVFNYIHNILSMPGYSAEEKQLVWQKALDHIEELLVLSPGK
AADLAAIHFSEQLESIISNLQDQFLLFQFLRSLLDPREGINQDLLHLPPCITEQFIELLC
QYSPDQVLETLKVLEYCRLEETIQITQKHQLHEASSYLLEKKGDIHGAFLVMLERLQSKL
LVLIQDGESSSEPSLLENIEDTLMKTIALCQRNSHSLDQQQREALWFPLLEAMMSPQKSS
GSSQCPHSESLKSLTMQVLNNMAAFIALPSILQRILQDPVYGKGKLGEIQGLVLGMLDTF
NYEQTLLETTTSLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRRQETADEIIVF
SCGHLYHSLCLLSKECGVVTKGLMRWMCYKCNSSNKGGKLSENFSELKKGTAASLAQMSS
ESALDPQQIQAFDQLCRLNRGTSRLALLTELARGGHGGGDKHGLLSVSHGEPATSSVFQN
ENFQLHLTPPPLAEE
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcccccgagccagcggaggccgagccgtgcccggagccgcccgcgcaccgg
ctgagcgtggcggagctcgaccgtgagctggactgtcgcagcgagctgattgatgacaaa
gaattcgacatacctcaagttgatacccctccaacgctggagagcatcctaaatgagact
gatgatgaagaagagtctttcattttggaggatccctttctcttgaacattgataacacg
gatacacactcctatgacacctcttctgtggccagctctgacagtggggacaggacacac
ctgaaaaggaagaaaaaactcccagattctctctcactccatggatcagtgatacggctc
tccctcctgaaaggaatttctgcccaagtagcatctgcagcagacaaagtggatgctggc
ttgcccactgcaattgcagcatcaaatctgatagcagtggggacttcccatgggttagca
ctgatatttggcaaagatcaaaaccaggctctccggctgtgtctgggcagcaccgcagtt
ggggcccagtacggggccatctctgctctcagcatcaacaatgactgttccaggctgctc
tgtggctttgcaaaaggacagatcaccatgtgggatctggccagtgggaagctgctgcga
tcaataacagatgcccaccctccaggaacagccattttgcacatcaagtttacagatgat
ccgacactcgcaatttgcaatgacagcggaggctccgtgtttgaactgtcatttaagagg
gttatgggagtgaggacgtgcgagtctcggtgtctcttcagtggctctaagggggaagtt
tgctgtattgagccgttacatgcaaaggctgatttgagagaccatcctatcacccagtat
tcactgctggccatggcctccctcactaagatcctggttattggcctgaagccatctctg
aaagtgtggatgacctttccctatggccgtatggacccttcgagtgtccctctgctggcg
tggcacttcgtggctgtgcagaactcggtgaaccccatgcttgccttctgtcgaggagat
gtcgtgtacttccttctggtcaagagagatgatagtggtgcaatacatgtcacaaaacag
aggcagcttcatctgcactatgatctcatcaactttacttgggtcaactcacggacagca
gtgctgctggacagtgtggagaagctgcacgtcatagaccgtcagactcaggaggagctg
gagaccatcgagatctcagaggttcagctggtctacaacagcagccacttcaaatccctg
gccacagggggcaatgtcagcgaggccttggcgctggttggagagaaagcttgttaccag
tccatcagcagctgtggtggtcaggtcttctaccttggaactaagtctgttcatgtcttg
acattgagaagctggagagagagagttgaccaccttctgaaacaagaacgtctcacagat
gccctggctcttgcttggtccttttatgaaggtaaagcaaaggctgttgtaggcttgact
ggggacacgagcaagaggaaggctgtaattgctgacagaatggttgaaatccttctccat
tacactgatcggactctgaagaaatgtcctgaccaaggaaaaatccaggttatggagcag
cactttcaggatgtggtgcctgtcattgtggattactgtctcctgctgcagcgcatggat
ctgttatttaaccagatatatgacaagatgagtgagaactctgtagccaaaggcatcttt
ttggagtgcttagagccatatatcttgagtgataagctgatgggaatcacagctcaagtg
atgaaagacttgctgcttcacttccaagacaagaacaggttggaaaacttggaagcctgc
attgtgcatatggatatcaccagtttagacattcagcaggtggttctcctgtgctgggaa
aaccgcctgtacgatgccatgatctacgtctacaacagcgggatgaacgacttcatcagt
cccatggagaagctgttcaaagtcattgctcctccactgaatgctggaaagtctctcaca
gatgagcaggtggtgatgggcaacaagctgcttgtgtatataagctgctgcttggcaggc
cgtgcatatcctttgggtgatattcctgaagatttggtacctctggtgaaaaatcaggtg
tttgagttcctgatccggctgcactcagctgaggggtctgtggatgaggaggtgtatccc
tacgttcggaccctgctgcactttgacacgcgggaattcctcaatgtgctggctctgact
tttgaagactttaagaatgataagcaagctgtggagtatcaacagagaattgtggacatt
cttctgaaagtcatggtggagaattccgacttcaccccatcgcaggttggctgtctcttt
accttccttgcccggcagctcgccaagcccaacaacaccttgtttgtcaacaggacactg
tttgaccaggtgctggagttcctgtgcagtccagatgacgactcccggcattccgagagg
cagcaggtccttttagagctgctccaggcaggagggatcgtgcagtttgaagagagccgc
cttatccaaatggcagagaaggctgagttctatcagatttgtgagttcatgtatgaacgg
cagcttcgctatgacaaaatcatcggctgttacctgcgggatcccctgaggaaggaagaa
gttttcaactacatccacaacattctgtccatgcctggctacagtgctgaggagaagcag
ctggtgtggcagaaagctttggaccatatagaggagttgctggtgctgagcccaggtaaa
gcagctgacctggcagccattcacttcagcgagcagctcgagagcatcatctccaacctg
caggaccagttcttgctcttccagttcctgaggagtctccttgatccaagagaaggcatt
aaccaagacctgctacatctcccaccctgtatcactgagcagttcatcgagctgctctgt
cagtacagcccagaccaagttttggagacgctcaaagttctggaatactgcagactggag
gaaaccatccagataacccaaaaacatcagctccatgaggcttcttcgtatttactagag
aagaagggagatatccatggtgcctttttggttatgcttgagcgattgcagagcaagttg
ctggtgcttattcaagatggtgaaagctcatctgaaccctccttgctagaaaatattgaa
gatactttaatgaaaacaattgctctttgccagaggaattcacacagtttagaccagcaa
cagcgagaggccctctggtttcccctgcttgaggccatgatgtccccacagaaatcctct
ggttcgtcgcagtgtccacactctgaatctttgaagagtttgacaatgcaagtgctaaac
aacatggctgcatttattgctcttccctctatcctgcagaggattctccaggatccagtt
tatggaaaagggaaacttggagaaattcaagggcttgtcctgggaatgctggacactttt
aactatgaacaaacccttctagagacaaccacgagccttttaaaccacgatctgcactgg
tccctgtgtaacctgagagcctctgtcaccagaggccttactccaaagcaggattactgc
tgcatctgtctccagcagtacaaaaggaggcaagaaactgctgatgaaatcattgttttc
agctgtggacacttgtaccactcgctgtgcctgctgagtaaggagtgtggggtggtcacc
aagggcctcatgaggtggatgtgctacaaatgcaactcgagcaacaagggagggaagctg
agtgagaacttctcagagctgaaaaaagggactgcagcatccctggcacagatgagttca
gagtctgcgttggatcctcagcaaatccaagcttttgaccagctctgccgactcaaccga
ggcacctcccgactggctctgctgacggagctggcgcgcgggggccacggtggcggtgac
aagcacgggctgctcagtgtttcccacggggagccggccaccagcagcgtcttccagaac
gagaacttccagctgcacttgacgccccctccgctggctgaagagtag
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integrated database retrieval system
