Taeniopygia guttata (zebra finch): 115490616
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Entry
115490616 CDS
T01082
Symbol
COL1A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu04510
Focal adhesion
tgu04512
ECM-receptor interaction
tgu04518
Integrin signaling
tgu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115490616 (COL1A1)
04518 Integrin signaling
115490616 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115490616 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
115490616 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tgu00536
]
115490616 (COL1A1)
Glycosaminoglycan binding proteins [BR:
tgu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115490616 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
115490616
NCBI-ProteinID:
XP_032599630
LinkDB
All DBs
Position
27:21118..38958
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AA seq
1453 aa
AA seq
DB search
MFSFVDSRSLLLVAATVLLARGQGEEDIQTGSCIQDGLTYNDKDVWKPEPCQICVCDSGN
ILCDEVICEDTSDCPNAEIPFGECCPICPDTDASPAYPENAGVEGPKGDTGPKGDRGLPG
PPGRDGIPGQPGLPGPPGPPGPPGLGGNFAPQMSYGYDEKAGGMAVPGPMGPAGPRGLPG
PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPAGPPGKNGDDGEAGKPGRPGERGPPGPQG
ARGLPGTAGLPGMKGHRGFSGLDGAKGEPGPAGPKGEPGSPGENGAPGQMGPRGLPGERG
RPGPSGPAGARGNDGAPGAAGPPGPTGPAGPPGFPGAAGAKGETGPQGARGSEGPQGARG
EPGPPGPAGAAGPAGNPGADGQPGAKGATGAPGIAGAPGFPGARGPSGPQGPSGAPGPKG
NTGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPAGLPGPAGERGAPG
SRGFPGADGIAGPKGPPGERGSPGPVGPKGSPGEAGRPGEPGLPGAKGLTGSPGSPGPDG
KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKPGERGAPGPPGAVGPAG
KDGETGAQGPPGPTGPAGERGEQGPAGAPGFQGLPGPAGPPGEAGKPGEQGVPGDAGAPG
PAGARGERGFPGERGVQGPPGPQGPRGANGAPGNDGAKGDAGAPGAPGSQGPPGLQGMPG
ERGAAGLPGAKGDRGDPGPKGADGAPGKDGLRGLTGPIGPPGPAGAPGDKGEAGPPGPAG
PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGETGDAGAKGDAGPPGPAGPTGAPG
PAGAVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNIGLPGPPGPSGKEGGKGPRG
ETGPAGRPGEPGPAGPPGPPGEKGAPGADGPIGAPGTPGPQGIAGQRGVVGLPGQRGERG
FPGLPGPSGEPGKQGPSGSPGERGPPGPMGPPGLAGPPGEAGREGAPGAEGAPGRDGAAG
PKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPQGPAGPPGPAGARGPAGPQG
PRGDKGETGEQGDRGMKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAAG
KDGLNGLPGPIGPPGPRGRTGDVGPVGPPGPPGPPGPPGPPSGGFDFSFLPQPPQEKAHD
GGRYYRADDANVMRDRDLEVDTTLKSLSQQIENIRSPEGTRKNPARTCRDLKMCHGDWKS
GEYWIDPNQGCNLDAIKVFCNLETGETCVYPTRASVARKNWYLSKNPKEKKHVWFGEAMS
DGFQFEYGGEGSDPADVAIQLTFLRLMATEAAQNVTYHCKNSVAYMEQASGSLRKALLLQ
GANEIEIRAEGNSRFTYGVTEDGCTSHTGAWGKTVIEYKTTKTSRLPIIDLAPMDVGAPD
QEFGIDIGPVCFL
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattctcggtcactgctgttggtagcagcgaccgtcctactcgcc
cgcgggcaaggagaggaagacatccaaaccgggagctgcatccaggatgggctcacctac
aacgacaaggacgtgtggaagccagaaccgtgccagatctgcgtctgcgacagcggcaac
atcctgtgcgacgaggtgatctgcgaggacacctccgactgccccaacgccgagatcccc
ttcggagagtgctgccccatctgtcccgacaccgacgcctcccctgcctacccagaaaat
gctggagtagagggtcctaaaggagacaccggccccaaaggagacaggggactgcccggc
ccccccggcagagacggaatccccggccagcccggcctgcccggcccccccgggcccccc
ggcccccccggcctcggcgggaacttcgctccccagatgtcctacggctacgacgagaag
gccggaggcatggccgtgcccgggcccatgggcccagctggtccccgtggtctccccggc
cctcccggtgctcctggtccccaaggtttccaaggtccccccggtgaacctggagagcct
ggtgcttctggtcccatgggcccccgaggtcccgccggcccccctggcaagaacggagat
gacggtgaagctggcaagcctggccgccccggagagaggggtccccccggcccccagggc
gcccgaggtctccccggaaccgccggcctgccgggcatgaagggacacaggggtttcagc
ggtctggatggtgccaagggtgagcctggacctgctggccccaagggcgagcccggcagc
cccggagagaacggagcccctgggcagatgggtcctcgaggtcttcccggcgagcgaggc
cgtcccggcccatccggccccgccggcgctcgtggcaatgacggtgctcccggcgctgcc
ggtccccccggtccgactggtcccgctggtccccccggcttccccggtgccgctggtgct
aagggtgagaccggtccccagggagcccgtggcagcgaaggtccccaaggtgctcgcggc
gagcccggtccccccgggcccgctggcgctgccggtcctgctggcaaccccggtgctgac
ggccaacccggtgccaagggcgcgaccggcgctcccggcatcgctggcgctcccggcttc
cccggtgcccgcggtccctccggaccccagggtcccagcggcgcccccggccccaagggc
aacaccggtgagcccggcgctccaggcaacaagggcgacaccggtgccaaaggcgaaccc
ggtcccgccggtgtccaaggcccccccggccccgctggagaggaaggcaagagaggagcc
cgcggtgagcccggccccgccggcctgcccggccccgccggcgaacgtggcgctcctggc
agccgcggtttccctggcgccgatggcatcgccggtcccaagggtccccccggcgagcgc
ggctcccccggccccgttggccccaaaggatctcctggtgaagctggacgccccggggaa
cccggactccccggtgccaagggtctgactggaagccccgggagccccggtcccgacggc
aagaccggccccccgggtcccgccggtcaagacgggcggcccggcccccccggtcccccc
ggagcccgaggccaggccggcgtgatgggattccccggtcccaaaggtgctgcgggcgaa
cccggcaaacccggcgagagaggagcccccggtccccccggcgccgtgggccctgctggc
aaagatggtgaaaccggtgcccaaggtccccccggccccaccggtcccgctggagaaaga
ggtgaacaaggtcccgctggtgctcctggcttccagggtctgcccggccccgctggcccc
cctggcgaggctggcaagcccggtgagcagggtgtccccggagacgccggagcccccggt
cccgccggtgccaggggcgagagaggattccccggagaacgcggcgtgcaaggccccccc
ggtccccaaggtcctcgtggtgctaacggtgctcccggtaacgatggtgctaagggcgac
gctggtgcccccggagccccggggagccagggcccccccggtctgcagggaatgcccgga
gagcgcggtgctgccggcctgccgggcgccaagggtgacagaggtgaccccggtcccaaa
ggtgctgacggcgctcctggcaaggacggtctccgaggcctgaccggccccatcggcccc
cccggccctgctggtgctcctggtgacaagggtgaagccggtccccccggtcccgccggt
cccaccggcgcccgtggtgctcccggtgaccgcggcgagcccggtcctcccggtcctgct
ggatttgctggcccccccggcgctgacggccagcccggtgctaaaggtgaaaccggggac
gctggagccaagggtgacgccggtccccccggccccgccggccccactggtgctcccgga
cctgctggtgctgttggtgctcccggtcccaaaggtgctcgcggcagcgctggaccccct
ggtgctactggcttccctggcgctgcaggaagagtcggaccccccggcccctctggcaac
atcggcctgcccggcccgcccggccccagcgggaaggaaggcggcaaaggaccccgcggt
gagaccggccccgccggccgccccggagagccgggccccgccggtccccccggtcccccc
ggcgagaagggagcccccggcgctgacggccccatcggcgctcccggtacccccggaccc
caaggtatcgccggccagcgcggtgtggtcggtctgcccggccagagaggcgagcgaggc
ttccctgggctgcccggcccctccggcgaacccggcaaacagggaccctccggctccccc
ggcgagcgcggcccccccggccccatgggcccccccggcctggccggaccccccggagaa
gccggacgcgagggcgctcccggtgctgaaggtgcccccggccgtgacggtgctgccggt
cccaagggcgatcgcggtgagaccggccccgccggcccccctggtgctcccggtgccccc
ggtgcccccggccccgtcggtcctgctggcaagaacggagatcgcggcgagaccggtccc
caaggtcccgctggcccccctggtcctgctggtgctcgtggtcctgctggtccccaaggt
ccccgtggtgacaaaggtgaaaccggtgaacagggtgacagaggcatgaagggtcacaga
ggcttctccggtctccagggcccacccggtcctcccggctctcctggcgaacaaggtcct
tctggtgcttctggtcccgccggtccccgaggtcctcccggctccgccggtgccgccggc
aaggacggtctgaacgggctgcccggtcccatcggtccccccggcccccgcggccgcacc
ggcgacgtcggtcccgtcggtccccccgggccccccgggccccccggtcctcccggcccc
ccgagcggcggcttcgacttcagcttcctgccgcagccgccgcaggagaaggcgcacgac
ggcggccgctactaccgggccgatgatgccaacgtgatgcgggaccgcgacctggaggtg
gacaccaccctcaagagcctgagccagcagatcgagaacatccgcagccccgagggcacc
cgcaagaaccccgcccgcacctgccgcgacctgaagatgtgccacggcgactggaagagc
ggcgagtactggatcgaccccaaccaaggctgcaacctggacgccatcaaggtcttctgc
aacctggagacgggcgagacgtgcgtgtacccgacacgggcgtccgtggcccgcaagaac
tggtacctcagcaagaaccccaaggagaagaagcacgtctggttcggcgaggccatgagt
gacggattccagttcgagtacggcggcgagggctccgacccggccgacgtcgccatccag
ctgaccttcctgcgcctcatggccaccgaggccgcccagaacgtcacctaccactgcaag
aacagcgtggcctacatggagcaggccagcggcagcctgaggaaggccctgctgctgcag
ggcgccaacgagatcgagatccgcgccgagggcaacagccgcttcacctacggcgtcacc
gaggacggctgcacgagtcacacgggcgcctggggcaagacggtcatcgagtacaagacg
acgaagacctcgcgcctgcccatcatcgatttggctcctatggacgtcggcgctccggac
caggaattcggcatcgacatcggccccgtctgcttcttgtaa
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