Taeniopygia guttata (zebra finch): 115490982
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Entry
115490982 CDS
T01082
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tgu03036
]
115490982 (SHOC1)
Chromosome and associated proteins [BR:
tgu03036
]
Eukaryotic type
Meiosis-specific proteins
Others
115490982 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
115490982
NCBI-ProteinID:
XP_030113537
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Position
Z:31281331..31327749
Genome browser
AA seq
1460 aa
AA seq
DB search
MLKTSQNKMFTALKYHSTDYLYESMARQKFSIWKLSLCFPPCLHQDEKYHLNGLFADDKY
RKPWTRIGSTQNMMAISALDQWKKSLPVEDFLEKKPISSVEFQTSNDLIEVIPSSNPHSQ
TYTEEPFLLMKNGFKEDSTQDKYLKIYYGTEFKEPQQDLCLEEEFVFIDNLERFSKKLPT
LSTLMSRLQFFLVKDPLLDSEGQFLTAENICRECLTFQNGMKVEEGQNELQWIKECFCTV
SMKDEEYFLLPVDFEFGKPNSGRSDCAKIPTYLQLKEVLNLAPVPVDDEDLCKQVIREDL
KAEITYKIEISKYCAIPQEVCSSISTSMLEFCESAEYILYLKDEMEVPLTPPCQQQRSWV
HFLCRGLQEEPISPSCNSILIAEPSREFLESLVWQSEKYRDNTSSLLLVEHPAVNFAHQH
HSLTELQKKLPLEVEAPVLGSLEEGWWLHRGLNPAAVEILEQFNMDGSNANSLLPTEVET
FTQFTSYQLERWLEEKKSVTNQELLSAEKHQSEKVDLSLQIQRQNFAMSALPSAKIHSTN
TSVEELTGGSISKIKTEEAICFLNQEKKTPKLSESDSCTVVSFKLDNSSCSGKPASLVLA
SKWANDDSDLNNFIMMRSKYTVTQREEKYYVDRPEKVVQPEEQHMSVHKEDDSFCETVKT
EIKTQENKEYYSIAVDIQPSESQCQAYCLLEEAAIPVLKDLTHLGVLASVNWSFDSVKFD
HTRFFLKQQEKVICDHFKQSRINEKEIMLFRHAALVHLLVTVRDLLLTCGLDTALGYLSK
AKDVYKNILESCLNNIWRQLKIVQYSSQKKHETHPKITALQCEILNWMKSCGESHSVKIL
IITRMDSEREKAAFIQPLSRIEGLKAVDLNSEKKQSPLSCKEIISNLSRYSCIIVHNQQI
GADFPWMHFSLVMEYDYSENSGWKNLCENLNVTYMTFKTTLPEKIQMGNHGNSFLLEVQI
PYIFLTTEGLLNMPDVLQLFESRYGITFVERSSGYSLRLFGSTDQYVVLTIDECTAIFLQ
SVEELNYEDSCDTVISRLMALSLQYMCCWIIFYSRERLSLEYSLKGNTLLNLVLIYATLI
ELTQKSEDFDVKVVLTPGIEETALVIRQIADNILIASNISPHEWLDKSWLSVLPSEPEKC
LLAFPCINPLVAQFMLKKGSSLNRLFLASFDQLQELLPQVPKKVLKHFSDISSYSLNTAA
LEKTVKGASHPENQNNFNTLYPDNKQHCQILELLDKAQNSTGTSHMNSEALIPPLNHHKG
FLKSDLPSCMQKKACSSDVITRRKVDFFAVSKDYKDFAHLEVKNSLHVQRHPFRMHDSSD
HSSKDSEKEDFFATFSDCEPQESSKSFLDEFRDTTFKSPEIQIDQPLWNDSSSTGPCNSF
THDGFLSDFFDDMDELQNLNFNQIGETSKGKRKQRSLFLQTKEKIKTDSGFPEVQEFKKR
RLIYERVPGRRDGQTRLKFF
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaaacatcacaaaacaagatgtttacagctttgaagtatcactcaacagactat
ttatatgagagcatggcaaggcagaagttttccatctggaaattatcactttgctttcct
ccctgtttacatcaagatgaaaagtatcatctcaatggactttttgctgatgataagtat
aggaagccatggactagaattggttcaacacagaacatgatggctatttcagcacttgat
caatggaagaaaagtttgcctgtggaggatttcctggaaaagaaacctatctcctctgta
gagtttcagactagtaatgatttaatagaagttattccaagttcaaatcctcactctcag
acttacacagaagaaccttttttacttatgaagaatggttttaaggaagactccacccaa
gacaaatatctgaagatttactatggcactgaatttaaagaaccacagcaagatttatgt
ttggaagaggagtttgtttttattgataatcttgaacgttttagtaaaaaattgccaact
ttatctacacttatgagcagactacagttttttttagtgaaagatccccttttggattct
gaaggacaatttttaacagcagagaatatttgcagagaatgtttgactttccaaaatgga
atgaaggtggaagagggtcaaaatgaattgcagtggattaaagagtgtttctgtactgta
tctatgaaagatgaagagtatttcctgttgcctgttgatttcgaattcggcaaacctaac
agtggcagatctgattgtgctaagattccaacatacttgcagctaaaggaggtgttaaat
ttagctccagtccctgtagatgatgaagacctttgcaaacaagtgattagagaagatctc
aaagcagaaattacatacaaaatagaaatttccaagtactgtgccattccgcaagaggtt
tgctccagtattagcacaagtatgttggaattctgtgagtcagctgaatatattctgtat
ttgaaagatgaaatggaagtgcctttaactcctccatgtcaacaacaaagatcatgggtt
cattttctgtgcagaggacttcaagaagaacctatttctccctcttgtaacagtattttg
attgcagagccctctagggaattcttagaatctttggtatggcaatcagagaagtatcgg
gataatacgagctctcttttgcttgtcgagcatcctgctgttaactttgcacatcagcat
cattcactgacagaactccagaaaaagctgccacttgaagttgaagcaccagtgcttggc
tcactagaagagggctggtggcttcataggggtttaaatccagcagctgtggaaattttg
gaacaattcaatatggatggaagtaatgcaaacagtctgctccctacagaagtagaaaca
ttcacacaatttacatcatatcaattagaaagatggcttgaagagaagaaatctgtcaca
aaccaagagctgctttctgctgaaaaacatcagtcagagaaagtagacttgtcactgcag
attcaaaggcagaactttgccatgagtgctctgccatctgccaaaattcacagtacaaat
acatctgtggaagagcttactggaggaagcataagcaagattaagacagaagaagcaatt
tgcttcttaaaccaagaaaagaaaactcccaaactatctgaatcagacagctgtacagtt
gtgtcttttaaactagacaactcatcctgtagtggaaagcctgcatcacttgtactggct
tctaaatgggccaacgatgattctgatctgaacaactttattatgatgagatctaaatat
acagtcacccaaagagaggaaaaatattatgtagatagacctgaaaaagtggtacagcct
gaagagcagcatatgagtgttcacaaagaggacgattctttttgtgagaccgtaaaaaca
gagataaaaacccaagagaataaagaatattacagtatcgctgtcgatattcaaccatca
gaaagccaatgccaggcatactgcctcttggaagaagcagccattcctgttctaaaagat
ttgacacatctgggtgtacttgcttctgttaattggagctttgacagtgttaaatttgat
catacaaggtttttcttaaaacagcaagagaaagtgatatgtgatcatttcaaacaaagt
cgaataaatgagaaggagataatgctgttcagacacgctgctctggtacacctgctggta
acagttcgagatctgctactaacatgtggcttggacacagctctaggttatttgtccaag
gcaaaggatgtctataaaaacattttagaatcctgcttgaataatatctggaggcagctg
aagattgtacagtacagcagccagaaaaagcatgaaacacatcccaaaataacagcactt
cagtgtgaaatattaaattggatgaaaagttgtggagagagccacagtgttaagatatta
ataattacaaggatggactctgaaagagaaaaagctgccttcattcaaccattatctagg
atagaaggtttgaaagctgtggatttgaattctgagaaaaaacaaagccctttaagttgt
aaagagatcataagcaatcttagtagatattcctgcattattgtacataatcagcaaatt
ggagctgacttcccttggatgcacttctcactagtaatggaatacgattattctgaaaat
tctggctggaaaaatctgtgtgaaaatctgaatgtcacttacatgacttttaaaaccact
ctccctgagaaaatacaaatggggaatcatggtaattcctttcttctggaagtacagatt
ccatatatatttctgacaactgaaggtcttcttaatatgccagatgttcttcaacttttt
gaatccaggtatggcattacctttgttgaaagaagcagtggttactccttaagactcttt
ggaagtacagatcaatatgttgtgctgacaatagatgaatgtactgctatctttctgcag
agtgtggaagaactaaattatgaggactcctgtgacactgtaatatcaaggctgatggca
ttatcactccaatatatgtgctgctggattattttctattccagagaaagactgagttta
gagtacagtctcaagggaaatactctgcttaaccttgtcttaatttatgccactctaatt
gaacttacacagaagtcagaagacttcgatgtgaaggtagttcttacaccagggattgaa
gagacagcattggtaattcgtcagattgctgacaacattttgatagcatctaatatcagt
cctcatgagtggctggacaaatcctggctttctgtcttgccatctgagccagagaaatgc
ctgcttgcttttccatgtatcaatcctttggttgctcagtttatgttaaagaagggatct
tcactgaacaggttatttcttgcaagctttgatcaactccaggaacttctgccacaggtt
ccaaaaaaagttttaaagcatttcagtgacatatcttcatacagcctaaatactgctgct
ctagaaaaaacagtgaaaggtgcatcgcacccagaaaaccagaataacttcaacacattg
tatcctgataataaacaacattgtcagattttagagctgcttgataaggcgcaaaacagc
acaggaacatctcatatgaattctgaagccctaattcctccactgaatcatcataagggg
tttttaaagtctgatcttccaagttgtatgcaaaagaaagcatgctcatcagacgtaatt
acaaggagaaaggtggatttctttgctgtatcaaaggactataaagattttgctcatcta
gaagttaaaaattctctccatgttcaaagacatcctttcagaatgcatgatagctctgat
cattcttccaaagactctgaaaaagaggatttttttgcaactttcagtgactgtgaacct
caggagagctctaagagttttctagatgaatttagagacacaacatttaaaagcccagaa
attcagattgaccagcccctgtggaatgattcttcatccacaggcccatgtaattcattt
actcatgatggttttctctctgatttctttgatgatatggatgaacttcaaaatctgaat
ttcaaccaaataggtgaaacatctaaaggaaaaagaaaacaaaggtctctattcttacag
acaaaagaaaaaattaaaacagattcaggatttccagaagtacaggagttcaaaaaaaga
agattgatatatgaaagagtccctggaagaagagatggacaaacacgtcttaaattcttt
tga
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