KEGG   Taeniopygia guttata (zebra finch): 115493068
Entry
115493068         CDS       T01082                                 
Symbol
MDC1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1 isoform X1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
tgu  Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tgu03400]
    115493068 (MDC1)
DNA repair and recombination proteins [BR:tgu03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    115493068 (MDC1)
SSDB
Motif
Pfam: BRCT_2 RTT107_BRCT_5 BRCT
Other DBs
NCBI-GeneID: 115493068
NCBI-ProteinID: XP_032601464
LinkDB
Position
Unknown
AA seq 1628 aa
MPREGALDDPAVAPDVEDPQKHLPCPRNTLDVVWKGPDPDAGDPKMPKVSQNTLEAPDVA
AETPNTDVLQAKNGHQMLLMDSDTDIEEEGPNPDVAPPKHLKITQNVPETPDVGLKIPNP
DVPWLKNGCGMLQVESDTDVEEEEEVDLDVELPKRLKMTQNVPETPDVVAKTPNPDVSGP
KMRCRMQVVGSDTVVEEDPYVQPQKRLRVTQNMPGIPDVEVKTPNPAVGMPKTGHWTMLV
DSNTDVEGEEENPDVQPPKQLRMTQNVPETPDVAASAPNLDVSGPKLHSCMLLVDSDTDV
EDEVNPDMQPPKRLRRTQNVSRIPGVEVETPNPAVERPKISHHTLVVDSDTDVEEDADMQ
PPKRLRMTQNVPETPDVQWGTPNPDVSGPTIGYQMLVDSSDTDVEEDPYVETLKKLEMTQ
NVPESPDVVTQTPNPDAGVTKNGCQALLMESDTDVEEEEGNPDVCPSKRWENLQNMLQTP
DVPTQPPNPAVEASQRRRALLDDSDTDVEEEEKPDVGSLKRLKPAPNVPETPDVRLKMPN
PDVSGTKIGCGTLLVDSETDVEEDETGPDVRPLKRRKMTPNVPESPDVLTPSPNPAVGGT
ESRCGALVVESDTDVEEDEACPDVWPSKRQKITQNVPETPDVGRHQRTQNVAETPDVEDE
EEGWDPDVATQLFLPSNPDGGEAEVDPDAGSPKQLQITQKPHEIPDVEKGEESDPDVATQ
LFLPSPDVGTPESPKMAPKDPKIPDVEGLPSLEPDVATQLFLPPHPGVGVGPNPDVLGPK
QHKMASNDPKISDVRAENPDPDVEGEEDLNVATQLFLPPDPDVEGEGPSGPDIGSSKPLK
SPLNPPEVPDVDMERPNPDVEATLRGHRKLLEDADPGVEEADPNPDVAASRRPQMAPKVP
RIADVEADTPSPDVEELGSPDLDPDVATQLFLPPNPVVGCPESPKMAPEESQIPDVEQEA
PNPDVGDPASPTQEEAEAPPTMQVRRSRRLAEIGGGGASRGPAPTQKRHDGGSKPRPSAK
PRPQRGRGRAGAGPEEATPPVSIKGSGRGPAVAPPPEEAEPAGGAKRRLRPRAAPGSAHI
RVLFTGLVASPALRVALGTLGGTEATSVHDCSHLVTDGIRRTLKFLCALGRGVPIVTPQW
LLESSHIGRPLSPGPFLPRDPPCERRFGFRLRPALARARERPLLQGYQVHVTPSVQPCPE
DMRDIVTCCGGTFLPQLPREHAPRVLVISCPQDRGLWPPAVAARLPLLSAELLLSGVLQQ
RLELAPFLLSPWQPPETPPNPTPNQKHPTQNPPNSAQKQKNPSQKTPNPPPETPNPTQRS
KNPPQKPPNPTQNAPNPTQKTPNPSQKQKNLPRKRPNPTQSTSPQTHAWPHFGGSSPPPS
PPRTRSGRRTPQNPPPKAPNSGTLQKTPNPPQKTPKRPQGHSEVPDPDFGIPDPPPDPPR
TRSHRGPPQNPPWDPPSSGTPKETPKRSPKNRNPPKKTPKHLQSLSGGSNPNAGVPDPPL
DPPPEPPRTRSGRRHPPDPGYPPKTPNRPQKAPHSAQNQKKPTQNPPNPAQELKNPSQKT
PNPPSKTPNPTEKSKNPPQKPTNSTQNPPNSTPKRPRSSPEGSRPSFGVAEPPPSPPRTR
SRRGIPIK
NT seq 4887 nt   +upstreamnt  +downstreamnt
atgccgcgggagggagctcttgacgatccagctgtggccccagatgttgaggacccccaa
aaacaccttccctgcccccgaaacaccctagatgttgtctggaaggggccagatccagat
gctggggacccaaaaatgcccaaagtgtcccaaaataccttggaggctccagatgtggca
gcagaaactccaaatacagatgtgctgcaggccaaaaatgggcaccagatgttgctgatg
gacagtgacacagatattgaggaggaggggccaaatccagatgttgccccaccaaaacat
cttaaaattacccaaaatgtgcccgaaactccagatgtggggctgaaaatcccaaatcca
gatgttccatggcttaaaaatgggtgtgggatgctgcaggtggagagtgacacagatgta
gaggaggaggaggaggttgatctagatgtggagctcccaaaacgactgaaaatgacccaa
aatgttccagaaactccggatgtggtagcgaagaccccaaatccagatgtttcaggccca
aaaatgcgatgtaggatgcaggtggtgggcagtgacacagttgtggaagaggatccatat
gtgcaaccccaaaaaaggctcagagtgacccaaaacatgcctggaattcccgatgtggag
gtgaaaaccccaaatccagctgtgggaatgcccaaaactggacactggacaatgctggtg
gacagcaacacagatgtggagggggaggaggagaatccagatgtgcagcccccaaaacaa
ctcaggatgacgcaaaatgtgcctgaaacgccagatgtggcagcatcggccccaaatctt
gatgtttcaggcccaaaactccattcctgcatgctgctggtagacagcgatacagatgtg
gaagatgaagtgaatccagatatgcagcccccaaaaaggctcaggaggacccaaaatgtg
tccagaattccaggtgtggaggtggaaaccccaaatccagctgtggaaaggcccaaaatt
agtcatcacacgttggtggtggacagtgacacagatgtggaggaagatgcagatatgcag
cccccaaaaaggctcaggatgacccagaatgtgcctgaaactccagatgtgcaatggggg
acaccaaatccagatgtttcaggccccacaatcgggtatcagatgctggtggacagcagt
gacacagatgtggaggaggatccatatgttgaaaccctaaaaaagcttgaaatgacccaa
aatgtgcctgaaagtccagatgtggtgacacagaccccaaatccagatgctggagtgacc
aaaaatggatgtcaggcactactgatggagagtgatacagatgtggaggaggaggaaggg
aatccagatgtttgtccttcaaaaaggtgggaaaatcttcaaaacatgctccaaactcca
gatgtgcccacacagcccccaaatccagctgtggaggcctcccagaggcgcagggcgctg
ctggacgacagcgacacagatgtggaagaggaggaaaaaccagatgttggatccctaaaa
agactgaaaccagccccaaacgtgcctgaaaccccagatgtgaggctgaaaatgccaaat
ccagatgtttcaggcacaaaaattggctgtgggacattgctggtggacagcgagacagat
gtggaggaggatgagacaggtccagatgttcggcctttaaaaagacggaaaatgacccca
aatgtacctgaatctccagatgtgctcacaccatctccaaatccagctgttggaggcact
gaatccagatgtggagccttggtggtggaaagcgacacagatgtggaggaggatgaggct
tgtccagatgtttggccctcaaaaagacagaaaattacccaaaatgtgcctgaaacgcca
gatgttgggaggcaccaaaggacccaaaatgtggctgaaactccagatgtggaggacgaa
gaggaagggtgggatccagatgtggccacccagctgttcctgccctcaaatccagatggg
ggggaggctgaggtggatccagatgctgggagcccaaaacaactccaaattacccagaag
ccacatgaaattccagatgtggagaagggagaggagtcagatccagatgtagccacccag
ctgtttctcccctctccagatgttgggaccccagaaagccccaaaatggccccaaaggac
cccaaaatcccagatgtagaggggctgccctccttggaaccagatgtggccacgcagctg
ttcctgcccccacatccaggtgtgggggttggcccaaatccagatgttctgggtccaaaa
caacacaaaatggcctcaaatgaccccaaaatttctgatgtgagggcagagaacccagat
ccagatgtggagggggaggaggacttgaatgtggccacccagctgtttctgccccctgat
ccagatgtggagggggaaggaccctcaggtccagatattgggtcctcaaaaccactcaaa
agtcccctaaacccgcctgaagttccagatgtggacatggaacgcccgaatccagatgtg
gaggcgacactgagaggccacaggaagttactggaggatgctgatccaggtgtggaggag
gcagacccaaatccagatgtggcagcctcaagaagaccccaaatggccccgaaagtcccc
agaattgcagatgtggaggcggacactccaagtccagatgtggaggagctggggagccct
gacctggatccagatgtggccactcagctgttcctgccccccaacccagttgtggggtgc
ccggaaagccccaaaatggccccagaggaatcccaaattccagatgtggagcaagaggcc
ccaaatccagatgttggggatcccgcaagccccacccaggaggaagcagaagctccaccc
accatgcaggtgcggcgcagtcggcgattggctgagatcggagggggcggagcctctcgt
ggccccgcccccacccagaagaggcacgatgggggctccaagccccgcccctcggccaag
ccccgcccacagagggggcggggccgagcaggggcggggccagaagaagccacacccccg
gtgtccataaaaggaagtgggcggggcccggcggtggccccgcccccagaggaggcggag
ccagcagggggcgccaagcgcaggctccgcccccgggcagcgccgggctccgcccacatc
cgggtgctgttcacgggcctggtggcctctccggcgctgcgggtggccctggggacgctg
ggtggcaccgaggccacgtcggtgcacgactgcagccacctggtgaccgatggcatccgc
cggacactcaagttcctgtgtgccctgggcaggggcgtccccattgtcaccccccagtgg
ctgctagagagttcccacattggccgcccgctgtccccaggtcccttcctgccccgggac
cccccctgtgagcggcgctttggcttccggctgcgcccagcgctggcccgggcccgggag
cggcccctgctgcaggggtaccaggtgcacgtcacccccagtgtccagccgtgccccgag
gacatgagggacattgtcacctgctgtggtggcaccttcctgccccagctgccccgggaa
cacgcgccccgtgtcctggtgatctcgtgtccccaggaccgcgggctgtggcccccggcc
gtggccgcgcggctcccgctgctctcggccgagctgctgctctcgggggtgctgcagcag
cgcctggagctggccccgttcctgctgagcccctggcagccccccgagacacccccaaat
cccaccccaaaccaaaaacaccccacccaaaaccccccaaattctgcccagaaacagaaa
aatccctcccaaaaaaccccaaatccccccccagaaaccccaaatcccacccaaagaagc
aaaaatcccccacagaaacccccaaatcccacccaaaatgctccaaacccaacccaaaaa
accccgaatccctcccagaagcaaaaaaatctcccccggaagcgcccaaatcccacccaa
agtacctcaccccaaacccatgcctggccacattttgggggctcctcccccccgccgagc
ccccccaggacccggagtgggcggagaaccccccaaaatccccccccaaaagccccaaat
tcagggaccctccaaaaaaccccaaatccaccccaaaaaaccccaaaacggccccagggt
cattcagaggttcctgaccctgattttggcatcccagaccccccaccggatccccccagg
acccggagccatcgtggacccccccaaaatcccccttgggaccccccaagttcagggaca
cccaaagaaaccccaaagcggtccccaaaaaaccgaaatccacccaaaaaaacccccaaa
cacctccagagtctttcagggggttctaaccccaatgctggggttccagatcctcccctt
gacccccccccggagccccccaggacccggagtgggcgcagacaccccccagatccaggg
taccccccaaaaaccccaaaccggccccaaaaagccccacattccgcccaaaaccaaaaa
aagcccacccaaaaccccccaaatcctgcccaggaactgaaaaatccctcccaaaaaacc
ccaaatcccccctcaaaaaccccaaatcccactgaaaaaagcaaaaatcccccacagaaa
cccacaaattccacccaaaaccccccaaattccaccccaaaacggccccggagttccccc
gagggttcccgccccagttttggggtcgctgagccccccccgagccctccccgcacccgg
agccgccgggggatcccaataaagtga

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