Taeniopygia guttata (zebra finch): 115493890
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Entry
115493890 CDS
T01082
Name
(RefSeq) lipoxygenase homology domain-containing protein 1
KO
K19538
retinitis pigmentosa 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
tgu03037
]
115493890
04812 Cytoskeleton proteins [BR:
tgu04812
]
115493890
Cilium and associated proteins [BR:
tgu03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
115493890
Cytoskeleton proteins [BR:
tgu04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
115493890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PLAT
DUF7755
ATS3
Motif
Other DBs
NCBI-GeneID:
115493890
NCBI-ProteinID:
XP_030122070
LinkDB
All DBs
Position
2:113881620..114015862
Genome browser
AA seq
2096 aa
AA seq
DB search
MFESVNKPRMYLKIKDDQCDGTGKGDEYCHFKIQKNLETGSVSLESVQNKGIYVGLLPDG
QTKPVVNTGERNIFFYPQVIKFGREKPMGTSAAPKQEKKDFRESQIQSAEAQEPVPQRLS
TPPPSKEMRNPQGGEHPLPSDDEWKVSILTGNAGTEASVALWIYGDRGLTGPITLGKDSR
KQLFFPMQEDEFQVKINSIGNIYKIRIELDGLTNEQPEWNLQRVILQHLKSKKTLNFPAN
TWLSKNYHDRKLLCELPVVEAGKPIYPIVLYHVYVHTGDLEQADTDCAVYLCIYGKRGDS
GLRLLHKTGTPAPFQRGMVSVFEVEAVSLGQLQKVLLCCEATTKSQHWYCDKVIVREAES
NSEYVFNCERWLPFMSQGITHSEIELYPQEGDWKITVVTGDFETAGTTATVFLYAYGENK
ASGPIILGSGKQQLFNPNSKDTFKINLRDLGQVYKIRIGHDNSGNDPSWYLEQVRLERVV
PVSAEEICLPIESWLSEDKDEGDTWREVAIRNPAEELLPLLVYEVRVYTGAKVGAETDSN
VYINLIGTRGDAGKRKLHRSKNNKIKFRHGQMDIFCIKAVSLGDLERVLISHDGTGPGSG
WFLDKIVIKHKEGEEAHEVVFPCNRWLDEYQDDGKTERELTANKHGSSMKSFLKAQWWRV
WVKTDGDSPEPQECKRTLVIYGSKGKSDELLLSPQTPGYVCFLPRATDEFIVETGDLGDV
YKIRVSCDDVPGFQGWHLKSFHLQELHTKQELNFECNCWLSLKRGNKELVKEFPTVTEDQ
KSLPVYKYVVSVHIGDRWGAGTFANVYITLYGKRGDTGVRKLHTSLTKGRKFQRNKVDSF
LVEAVSLSHLQKVVIGHDGEGYGAGMYLKMVTVKESQDSDKEWVFPLWNWLDTHLGLCET
VCEIVTVGRRSTLSPKLPEINMKSSGFWMMDITGSDLIAEEDPICLSFIFYSNLSHKKLP
LQVTGKATQIKDELADIGSIYKVQVTGPHSELKQPWHLDSLHMKHTGTKEEMYLDFDCWF
NPKEDKCVELPALYADQDPLPVVDYEIHLHTGDLKKADATGEVYLRIQGEKCDSGKRWLN
SKNSLITFARGQVDIFKIKSVYLGKLNQVCVGFKSLRKDGWFLEKILIKEVFYPFSTHVF
FHDGWINKRSKEDFVEVAIPLKETSVTSLPMKNLDTKSRGRWQTWLQCTQVPEDVPNIEI
VAFGRKGKSPTQKVQNLNDTPFLLTVGDIGDITKVSFVLCGPSLRRGIKLHKLQLKDLDT
KQELSFHTEASYLFGEDGSETVAELAAVRPDQPPLREVLYIINVHTGTLPASGTDANVFI
TVFGERGDSCKRRLGHSHFERGQVCISEIRAVNLGQLSKVLVEHHNVGYGAGWYLDQVVI
HESGKTEEQYVFLCQQWLDSGVGDAQMERTLKLLGKIRNGVLTGKIYGTWDIHVTTSDIS
SSSMNPRMSLTVCGEKGTCTSVIFPKGSLKKEQIYETSIELSKKFNTIFKVRLEIEEAGE
GETWHCREVKLQHRETKNVLEFPFCHNFADEEGGRVTELPVLTAGSPFPAVKIYVLYITT
GAIPGSGTDADVHVMLQGSLGDTGRRKLIRKGDEAFTKGKVDIFQVEAVDIGILHRMVVE
KGRGSDWLLEKIIVKESASSGTETLFMAQTWLKDRRDGKRSASVTLDATEVQERRSTSAW
PLGREQMNSEGRWRIYFTKHQEETKSESEKLSENISKMVMVFYGSNGKSNPVTMENKVEH
QTENQITYDIHLPSDLGMLYKVRLGLQSLENNISQLSLRHFKIQNTSTLDTFSLTINKTL
PLSPNGDRWIEFPIQWPLKEALSVVTYHLTVFSRNILNERNLVHMTACLYGTHGDTGDRS
LLQSLQNVQQGEKNESLLVIVDAVDLGELEKIVLLISSKTDCKLDIKKLHVQEAAKEHPI
YVFEVNEEFSVNANKPKIQREIPRSFVIRGEKQKNDIDNNLNEEGSKVKNLTEYTIKVYT
GDKRGAGTDANVHIILFGNEEKSEVFPLSQSLEHQNPFERGKVDTFKIKTKKLGSLHSIE
IGHDGKGFASGWFLEKVEITDVARNSMHCFNCNRWLSEDENDGLTIVQLYPQMLDF
NT seq
6291 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaagtgtgaacaaaccaagaatgtatctgaagatcaaagatgaccagtgtgat
ggaacaggcaagggtgatgaatactgtcattttaaaattcagaagaatttggaaactgga
tctgtgagtctggaatcagtgcaaaataaagggatatatgttggtcttctgccagatggc
caaactaaaccagttgttaacactggagagagaaatatatttttctacccacaggtcatc
aaatttggccgggaaaagcctatgggaacatctgcagcacccaaacaagagaagaaagac
ttcagagaatctcaaatccaatcagcagaagcccaggagccagtacctcaaaggctttca
actcccccaccttcaaaggaaatgagaaatccccaaggtggtgagcatccccttccttcg
gacgatgaatggaaagtgtcaatactgacaggaaatgcaggaactgaagcaagtgtcgct
ctttggatatatggagacagaggattaactggaccaataactcttggcaaggacagcaga
aagcagctgttttttcccatgcaggaagatgaatttcaggttaaaataaacagcattggg
aatatctacaagataagaattgaacttgatggcttaacaaatgagcaacctgagtggaac
ttgcagcgggtgatactgcaacatctaaagagcaagaaaacactgaattttccagcaaac
acatggttatcaaagaattatcatgatagaaaacttctgtgtgaacttcctgtagtggaa
gctggaaaacctatctatccaattgttttataccatgtttatgtccacaccggtgacttg
gagcaagctgatacagactgtgcagtttatttgtgtatctatggaaaaagaggagattct
ggtctaagacttctgcataaaactggtacaccagcgccatttcagagaggaatggtcagt
gtttttgaagtggaagctgtatcccttgggcagctgcagaaggtgctgttgtgctgtgag
gccactaccaagtcccagcattggtactgcgataaagtcattgtcagagaagccgagagc
aactcggaatatgttttcaattgtgagaggtggcttccatttatgtcgcaaggtataacc
cattcagaaattgaactgtaccctcaagaaggagactggaagataactgtagtcactggg
gattttgaaacagctggcacaacagcaacagtattcctttatgcttatggagaaaacaaa
gcttctggtcctattattttgggatctgggaaacagcagctgttcaatcccaacagtaaa
gatacatttaagatcaatctcagagatcttgggcaagtatataaaatccgcattggccat
gacaactctggaaatgatcccagctggtacctggagcaagtcagacttgaaagagtagtc
cctgtttctgctgaagagatttgtctccccatagagagctggctttctgaagacaaggat
gaaggtgatacatggagagaagtggcaataagaaaccctgcagaggagcttttgccattg
ttggtgtatgaggtccgtgtatacactggtgctaaagttggtgctgagacagattccaat
gtttatatcaacctcattgggacaagaggagatgctggcaaaaggaagctccataggtct
aagaataataaaattaagtttcgacatggacagatggatattttctgcataaaagctgtc
tcactgggagacttggagagagttctgattagccatgatggaactggtccaggcagtgga
tggttcctggataagattgtcatcaaacataaagaaggagaggaagctcacgaggttgta
tttccttgtaatagatggttagatgaataccaagatgatgggaaaacagagagggagcta
actgccaataagcatggcagttcaatgaagtcatttcttaaagcacaatggtggagagtg
tgggttaaaacagatggagattccccagagccacaggaatgtaaaaggacccttgtgatt
tatggctcaaagggcaaaagtgatgagcttctgctttctccacaaaccccaggatatgtg
tgctttctccccagagcaactgatgaattcattgttgagactggagatctgggagatgta
tacaagattcgagtcagctgtgatgatgtgccaggctttcagggctggcatctgaagtct
tttcacttacaagagttgcatacgaaacaagaactgaactttgagtgcaactgctggctc
tctcttaagagagggaataaggagctggtaaaagaattccccacagtcaccgaggaccag
aaatctttaccagtctataagtatgttgtttctgtgcatattggtgaccgctggggagca
gggacttttgcaaatgtttatatcactctctatggcaaaagaggggacacaggtgtgagg
aaacttcatacatctctaacgaaaggaagaaaatttcagagaaataaggtggattcattt
ttggtggaagctgtttctctgagtcatttgcaaaaagtggtcataggacatgatggagaa
ggctatggagcagggatgtacctcaagatggtaacagtcaaggaatcacaagattcagac
aaagaatgggtctttccactgtggaattggcttgatactcatctgggtttatgtgagact
gtttgtgagattgtaacagttggtagaaggtcgactcttagtcctaaactgcctgaaatc
aacatgaagtcatcaggtttctggatgatggatatcactggatctgacttaattgctgaa
gaggatccaatatgcctttcttttatcttctacagcaacctgagtcacaaaaagttgcca
cttcaagtcacaggaaaagcaactcagatcaaagatgaactggcagatattggctcaata
tacaaagttcaggtaactggcccacacagtgagctaaaacagccatggcacttagattca
ctgcatatgaagcacacaggcacaaaggaagagatgtatttagattttgactgctggttc
aaccctaaggaagacaaatgtgtggagctgccagctctctatgcagatcaagaccctttg
cctgttgtggactatgagatccatttgcacacaggagacttgaagaaggcagatgccact
ggagaggtttatcttcgtatacaaggagaaaaatgcgactcagggaagagatggcttaac
tcaaaaaacagcctgataactttcgctagagggcaggtggatattttcaaaatcaaatct
gtataccttggcaagttgaatcaagtttgtgttggatttaaaagtctaagaaaagatggg
tggtttttggaaaaaattcttataaaagaagtcttctaccctttttctacacatgttttt
tttcacgatggatggatcaataaacgctccaaggaagattttgtagaagtcgcaattcca
ctcaaagaaacatctgtgacatctcttcccatgaaaaatttagatacaaaaagtagagga
cgatggcaaacatggttgcaatgcacacaagtaccagaagatgttcctaacattgaaatt
gttgcatttggaagaaaagggaaatcacctacacagaaagttcaaaatctaaatgatact
ccctttttgttgactgttggtgatattggagatataacaaaagtctcctttgtgttatgt
ggtccatccttgagaagaggaattaaacttcacaagcttcagctaaaagacttggacact
aaacaagagttgagctttcacactgaagcctcatatctgtttggagaagatggatctgag
accgtggcagagcttgctgcggtcagaccagaccagccaccactcagggaagtcctttac
atcatcaatgtccatacaggaacactgcctgcatcaggaacagatgcaaatgtatttatc
acagtatttggagagaggggagattcctgcaaaaggagactagggcactcacattttgaa
agagggcaggtttgtatctctgaaattagagcagtaaaccttggacagttaagcaaagtg
cttgttgagcaccataatgtgggttatggagctggatggtaccttgaccaagttgtcatc
catgaatcaggcaagactgaagaacaatatgtatttctttgccagcaatggttagacagt
ggagttggtgatgcacagatggaacgaacattgaagcttcttggaaaaatcaggaatgga
gtattgacaggaaagatttatgggacttgggatatccacgtcacaactagtgatatttct
tctagttccatgaaccctagaatgtctctaacagtatgtggtgaaaaaggaacttgtact
tcagtcatattccccaaaggatcccttaaaaaagagcagatttatgagacttctattgaa
ctgagtaagaaatttaataccatattcaaagttcgccttgaaattgaagaagctggagaa
ggagagacttggcattgccgtgaggtaaagcttcaacacagagaaactaaaaatgttcta
gaattccctttttgtcataactttgccgatgaagaaggaggaagagtgactgaacttcca
gttcttacagctgggtctccttttccagcagtgaaaatctatgttctctacatcaccacg
ggagctatccctgggtcaggaacagatgcagatgtgcatgtcatgctgcaaggttccttg
ggagatactggcagaagaaagttaattagaaaaggagatgaagctttcactaaaggaaag
gtggatatttttcaagtggaggcagtagatattggtattctgcacaggatggttgttgaa
aaagggagaggctctgactggcttctggagaagattattgtgaaagagtcagcatcttca
gggacagaaacactgtttatggctcaaacatggcttaaagatagacgtgatggaaaaaga
tctgcctcagtaactctggatgccacagaagttcaggagaggaggagtacatctgcctgg
cctttaggaagagagcaaatgaattcagaaggcagatggaggatttatttcacaaagcat
caagaagaaacaaaatcagaatctgaaaagttgtcagaaaatatatccaagatggttatg
gttttttatggaagcaacggcaagtcaaatccagttaccatggaaaacaaagtggaacat
cagactgagaaccaaataacatatgatatacatttgccatctgatttgggaatgctttat
aaagtgcggcttggtctccagagtttggaaaacaacatatcccagttgtctcttcgtcac
tttaaaatacagaacacatcaaccctggatacctttagtctcaccataaataaaacactt
cctctttctcctaatggagacagatggattgaattccctatacagtggccattaaaagaa
gcactttctgtggttacatatcatctaacagtattttcaagaaatattttgaatgagaga
aatttagtgcatatgactgcatgcttatatggtactcatggtgacacaggagacagatcc
cttctccagtcattgcagaatgtacagcagggagagaaaaatgagtcacttctagttatc
gtggatgctgttgacttgggagaactggagaaaattgttcttttgattagcagtaaaaca
gactgcaaattggacatcaaaaaactgcatgtgcaagaagctgcgaaggagcatcctatc
tatgtatttgaagtgaatgaagaattttctgtgaatgcaaataagcccaaaatacagaga
gaaattccaagatcttttgttattagaggagagaaacaaaagaatgacatagataacaac
ttgaatgaagaaggaagtaaagtaaaaaatttgacagagtatactattaaagtgtataca
ggtgacaaaaggggagcagggactgatgccaatgtacacattattttatttgggaatgag
gagaaatctgaggtatttccactctctcagtcactggagcatcagaacccctttgaaaga
ggaaaggttgataccttcaagattaagacaaaaaaattaggcagcctacattcaattgaa
attggccacgatgggaaaggatttgcaagtggctggtttctagaaaaagtggaaatcaca
gatgtagctaggaattcaatgcattgctttaactgtaacaggtggctctctgaagatgaa
aatgatggcctcaccattgtgcagctttatccacagatgcttgatttctga
DBGET
integrated database retrieval system
