Taeniopygia guttata (zebra finch): 116806753
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Entry
116806753 CDS
T01082
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tgu03041
]
116806753
Enzymes [BR:
tgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116806753
Spliceosome [BR:
tgu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116806753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
AAA_19
AAA_22
HA2_N
Ank_2
nSTAND3
ATPase
PhoH
Ank_4
AAA_16
UvrD-helicase
AAA_7
AAA_23
ResIII
Motif
Other DBs
NCBI-GeneID:
116806753
NCBI-ProteinID:
XP_032600210
LinkDB
All DBs
Position
Z:complement(20757504..20781463)
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AA seq
1283 aa
AA seq
DB search
MSRHRRVPRRQPGGAAGDGAAAAAVRARAEPLREAGVDEEVEMAVQLALERFQSGDEAEM
EFPSSFTSTERAFVHRLCQSLGLVSKSKGKGANRYLTVRKKDVSEAHVVMTCDLALRTKH
AVWSLIQRFPVTNKERKELLPRTERGSVRAVASENKEVNKTSGRLNDGIPQVPVKRGESE
FDSFRQSLPVLEKQEEIVQIIKDNKIVLVIGETGSGKTTQIPQFILDDCYKNGTPCRVFC
TQPRRLAAVAVAERVAAERREKIGQTIGYQIRLESRVSPKTLVTFCTNDMLLGTLMAGDS
TLSTVTHVIVDEVHERDRFSDFLLIKLRDLLQNQNNLKLILSSAALDANLFIRYFGSCPV
IHIQGRPFQVKEMFLEDILRSTGYANKEMVKYKEKKQQEEKQKNTLAEWCSAQDNTNKGT
SRRQKSVPRTNEEYKWLDDGGDTVFNQLTEKDVNCLELWIVKEMDSCLSDIWLHKDIDLF
AQLLNLILTENVSVDYRHSETGATALMISSGRGFLSQVEQLISMGASIYCKSSNGWMAVD
WARHFGQTEVVHLLESYSASFGFGNMDESSLVQKSASDLSAEDRELLTAYHHSFDDEKVD
LDLIMHLLHSICHSSDAGAILIFLPGYDEIVSLRDRIVFDDKRFTDNAHRYQVFMLHSSM
QTLYQKKVLESPPFGIRKIILSTNIAETSITVSDVVFVIDSGKVKEKSFDALSRVTMVKM
GWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQSPELLRMPLQEICLYTKILAP
INCPIVDFLMKAPDPPPAVTVRNAVHMLKTIDAMDPWEDLTELGYHLTELPVEPHLGKMV
LYAVVLKCLDPVLTIACALACQDPFVLPTLAFQKRAAVLCRKRFAAGTFSDHMALLRAFQ
AWQKARSDGWERAFCEKNFLSQATMETIAGMRTQVLGQLRASGFVRARGGADIRDVNTNS
ENWAVIKGALVAGMYPNLVHVDRDSLVLTESKEKKVRFHPTSVLGQSQYKKIAPANGQAA
AIQALPTDWLIYDEMTRAHKTANIRCCSVVTPVTVALFCGPARLPSNALQASSSFRGRGV
SNDSSDSEMEDKTSADLALLKLDEWLHLKLDPEAAGMLLQLRQKWHSLFLRRMRAPSKLW
SEVDETTVRAITAVLSAEEQFAGLQQPSGIGQRPRPVTCEELPLASTWMSTNSRNSSTET
ELSDFSHAEKVSVKSTPALHQPKKYKEKDILLSRQSSDDRSAQSSVKPADSTSYSNACAT
PSSPVLGKKGLTAGLLAKGAKRS
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacacaggcgggtcccgcggcggcagcccggcggggctgcgggggacggggct
gccgccgccgcggtgcgcgcccgggccgagcccctcagggaggccggcgtggacgaggag
gtggaaatggcggtgcagctggccctggagcggttccagagcggggacgaggcggagatg
gaatttccttctagtttcactagtactgaaagagcatttgttcaccggctctgtcagtct
cttggactggtatctaaaagcaaaggaaaaggagccaatcgatacctgactgtaaggaag
aaggatgtgtcagaggcacacgtagtcatgacttgtgacttggctctccgtacgaaacac
gccgtttggagtctaattcagcgctttcccgtcacaaataaggaacgcaaggagctcctg
ccaaggacagagcgaggaagtgtccgtgctgttgcatctgaaaacaaagaagtaaacaag
acaagtggtcgacttaatgatggtatcccccaggtcccagtgaaaagaggggaatcagag
tttgattccttcaggcagtcactaccagttcttgaaaaacaggaagaaattgtccaaatc
ataaaggacaataaaattgttttagttataggagagactggatcaggaaaaacgacgcag
atccctcaatttatccttgatgactgctacaagaatggaactccctgtcgtgtgttttgt
actcagccaagacgtttagcagctgttgctgtggctgaaagagtggcagcagaaagaaga
gagaagattggccagacaattggttaccagatccggttagaaagcagggtttctccaaag
acactggtaacattctgcactaatgacatgcttcttggcacgctgatggcaggagacagc
accctctccactgtgacccatgttattgtggatgaagtacatgagagggataggttcagc
gacttcttgctaataaaactgagagatctgctgcaaaaccagaataatttaaaactaatt
ctctctagtgctgctctagatgcaaatctcttcattaggtattttggaagctgcccagta
atacatatccaagggagaccttttcaagttaaagagatgtttctggaggacattttacga
agcactgggtatgcaaacaaagagatggtgaagtacaaagaaaagaagcagcaagaagag
aaacagaagaacactcttgctgagtggtgttcagctcaagataacactaacaaagggaca
tctcggagacaaaaatcagttccaaggacaaatgaggagtacaaatggttggatgatggt
ggtgacacagtatttaatcaactgactgaaaaagatgtgaattgccttgaactgtggata
gtaaaagaaatggattcctgtctttctgacatctggttgcataaagatattgatttgttt
gctcagctgttaaatcttattttaactgaaaatgtcagtgttgattataggcacagtgaa
actggtgcgactgctctgatgatttcttcagggagaggctttttgagtcaagtagaacag
ttgatcagcatgggagcaagtatctactgcaaatcatctaatggctggatggctgtggac
tgggctaggcactttggacagacggaggttgttcatctgttggaatcctacagcgcttca
ttcggatttggaaacatggatgaaagttccctggtccaaaaaagtgctagtgaccttagt
gcagaggacagagagctactgacagcttatcatcacagttttgatgatgaaaaagtggat
ctggatctgataatgcacttacttcacagcatctgtcatagttctgatgcaggagcaatt
ttaatatttcttcctgggtatgatgagatagtgagcctgagagaccgcattgttttcgat
gataagagattcactgataatgctcacagataccaagttttcatgcttcattcaagtatg
cagactttgtaccagaagaaagtgcttgaaagtccaccttttggcattcgcaaaattatt
ctttctactaatattgcagaaaccagcataacagtcagtgatgtggtgtttgtcattgac
tcaggcaaggtgaaagagaagtcttttgatgcactgagtcgtgttacaatggtaaaaatg
gggtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcgctgtcagcct
ggagtctgctttcgtctcttcagcaggctccgatttcagaatatgttggaatttcaatct
ccagaacttctaaggatgccgcttcaggagatctgtttgtacacaaaaattctggctcca
attaattgtccaattgtagactttcttatgaaagctcctgatcctccgcctgctgtaact
gtgagaaatgctgtgcatatgcttaagaccatagatgccatggacccttgggaagatctc
actgagcttggttatcacctcactgaattacctgtagagccacacctcggtaaaatggtg
ttgtatgctgtagttctgaagtgcctggatcctgttctgaccattgcctgtgctcttgcc
tgccaagacccttttgtgctgcccacgctggccttccaaaagcgtgcagccgtgctgtgc
aggaagcgttttgctgccggaacgttcagtgaccacatggccctgctcagggctttccag
gcatggcagaaggcacgcagtgacggctgggagagagccttctgtgaaaagaacttccta
tcccaagccacaatggaaaccattgcaggaatgagaacacaggtgcttggccagcttaga
gcctcaggttttgtgagagccagaggaggagctgatattagagatgttaatactaactct
gagaactgggctgtaattaaaggtgccttagtggcagggatgtatcccaatcttgtgcat
gtagacagagacagcctggtgttgacggaatcaaaggagaagaaagtgcgatttcatcct
acctctgttcttggtcagtctcagtataaaaagattgccccagcaaatggacaagctgca
gccatccaggctctccctacagactggcttatatatgatgaaatgacgagagctcacaag
acagcaaacatcaggtgctgctctgttgtgacacctgtcacggtggccctcttctgtgga
ccagccagactgccaagtaatgccttgcaggcatcttcatcctttcgagggagaggggta
tctaatgatagcagcgacagtgagatggaggacaagacatctgctgatctggcactgctg
aagctggatgaatggctccatctcaaactggaccctgaagctgctggtatgctgctgcaa
ctcaggcagaagtggcacagcttgtttctgcgtcgtatgcgagctccttctaagctgtgg
tctgaggttgatgaaacaactgtaagagcaattacagctgttctgagtgctgaagaacag
tttgcaggtctacagcagccttcaggaattggccagagaccaaggcctgtgacttgtgaa
gaacttcctttggcatctacatggatgtcaaccaacagcagaaacagctcaacagaaaca
gaattgtctgacttctctcatgctgaaaaggtttcagtgaaatctactcctgcactccac
cagccaaagaagtacaaagaaaaagacattttgctctccagacaatcctcagatgacaga
tcagctcagtcctcagtgaagcctgcagacagcactagctattccaacgcctgtgctact
ccttcttctccagtgttgggaaagaaggggctaacagcaggcctgttagctaaaggagcg
aaaagaagctga
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