Taeniopygia guttata (zebra finch): 116808722
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Entry
116808722 CDS
T01082
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116808722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgu03019
]
116808722
03012 Translation factors [BR:
tgu03012
]
116808722
Enzymes [BR:
tgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116808722
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116808722
Translation factors [BR:
tgu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116808722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_22
AAA_19
ATPase
nSTAND3
AAA_23
NPHP3_N
Sir1
Motif
Other DBs
NCBI-GeneID:
116808722
NCBI-ProteinID:
XP_032606013
LinkDB
All DBs
Position
9:24772837..24788720
Genome browser
AA seq
980 aa
AA seq
DB search
MSFEQRRGRGRGRGRGRGGDGGADSSAAGGPGGRERHPGHLKGREIGMWYARRQGQKNRD
ADRQQRAVVRMDERREEQIVQLLNSVQAKNDKEQEAMSWWSGDEEGPAPEQPAKVKPDPE
KAPVRRTPAWEKTSLDLDVEFLCEKTEQDADLDEQLKEDLMKKRSDPRYIEMQRFREKLP
SYGMREELVKLINSSRVTVISGETGCGKTTQVTQFILDDHIERGLGSTCRIVCTQPRRIS
AISVAERVAAERAESCGNGRSTGYQIRLQSRLPRKQGSILYCTTGIVLQWLQSDKHLSSI
SHVVLDEIHERNLQSDVLMSIIKDLLNVRLDLKVILMSATLNAEKFSEYFDHCPMIHIPG
FTFPVVEYLLEDVIEKLRYTPEKTDRRQHWRKGFMQGHMSRPEKEEKEEIYRQQWPGYLR
QLQDRYSASTISALEMMDDDKVDLDLIAALIRHIVLEEEDGAILVFLPGWDNISTLHELL
MSQVMFKSDRFIIIPLHSLMPTVNQTQVFKKTPPGVRKIVIATNIAETSITIDDVVFVID
GGKIKETHFDTQNNISTMAAEWVSKANAKQRKGRAGRVQPGHCYHLYNGLRASLLDDYQL
PEILRTPLEELCLQIKILRLGGIAYFLSKLMDPPSRDAVMLAINHLMELNALDRQEELTP
LGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKEL
SKNTKSDHLTVVNAFTGWEEARSCGLRNEKDYCWEYFLSSNTMQMLHNMKGQFAEHLLAA
GFVNSRNPKDPKSNTNSGNEKLLKAVICAGLYPKVAKIRPSFSKKRKMVKVCTKTDGSVN
IHPKSVNVEETEFHYNWLVYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDKDQDTI
AVDEWIVFQSPEKIANLVKKLRKELDDLLQEKIEKPHPVDWQDIKCRDTAVLTAIIDLIT
TQENEGVRNFAPRFQGERYS
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcgagcagcgccggggccgcgggcgcggccggggccggggccgcggcggggat
ggcggcgccgactcctccgcggcgggcgggcccggcgggcgggagcggcaccccgggcac
ctgaagggccgcgagatcgggatgtggtacgcccgcaggcagggccagaagaaccgggac
gccgaccggcagcagagagccgtggtgcgcatggacgagcgccgggaggagcagatcgtg
cagctgctgaactctgtccaggctaaaaacgacaaagagcaagaagccatgtcctggtgg
tccggggatgaagagggccctgctccagaacagcctgccaaagtgaaaccagatcctgag
aaagctcctgtcagacggacaccagcctgggaaaaaacatccctggatttggatgtggaa
ttcctctgtgagaaaaccgagcaagatgctgatttagatgagcaacttaaagaagactta
atgaagaagagatctgatcccagatatattgaaatgcagagattccgagagaagctcccc
tcatacgggatgagagaggagctggtgaagctgatcaacagcagccgtgtgacggtgatc
agcggcgagacgggctgcgggaagaccacgcaggtgacgcagttcatcctggacgaccac
atcgagcgcgggctgggctccacctgccgcatcgtgtgcacgcagccgcgcaggatcagc
gccatctccgtggctgagagagtggctgctgagagggcagagagctgtggcaatggcagg
agcacggggtaccagatccgcctgcagagtcgcttgccaaggaagcaaggttcaattttg
tactgtaccacgggaattgtcctgcagtggctccagtcagataaacacttgtccagcatc
agtcatgtagttcttgatgaaatccatgaaagaaatctgcaatcagatgttttaatgagc
attattaaagatctcctgaatgttcggctggatctgaaagtcatactgatgagtgctact
ttaaatgcagagaagttttctgagtactttgaccattgcccaatgattcacatccctggc
ttcactttcccagtggtggaatatctgctcgaagatgtcattgagaagttgaggtacacc
ccggagaagacagaccgccggcagcactggaggaagggcttcatgcagggccacatgagc
aggccagagaaggaggagaaggaggagatctacaggcagcagtggccaggctacctgagg
cagctgcaggacaggtattcagcaagtacaatcagtgccctggaaatgatggatgatgac
aaggtggacctggaccttatagcagcactgatcagacacattgtgctggaagaggaggat
ggtgccattctggtgtttctgccaggctgggataacatcagcactttgcacgagctcttg
atgtctcaagtcatgtttaagtcagataggtttattatcatacctttgcattcactgatg
cctacggttaaccagactcaggtgttcaagaagaccccaccaggagtgaggaaaattgtg
attgcaaccaacattgcagaaaccagcatcacaattgatgacgtcgtgttcgttatagat
ggggggaaaataaaggagactcactttgacacccagaacaacatcagcaccatggcagca
gagtgggtcagcaaagccaatgccaagcagaggaagggtcgagcaggaagagttcagcca
ggccactgttaccacctgtacaacggactgcgtgccagccttctggatgattatcagtta
ccagagatcctgaggacacccttggaagaactctgcttacaaatcaagatcctgaggctt
ggtggaattgcctattttctgagcaagctgatggaccccccgtctcgtgatgctgtgatg
ttggccataaaccacctcatggagctgaacgctctggacaggcaggaggagctgaccccc
ctgggggtgcacctggcccggctgcccgtggagccgcacatcgggaagatgatcctgttc
ggagccttgttctgctgcctggaccccgtgctgaccattgcagccagcctcagcttcaag
gacccttttgtcatccctctgggcaaagagaaaatcgcagatgcaagaagaaaggagctg
tcaaagaacacgaaaagcgaccatctgactgtggtgaatgctttcactggctgggaagag
gctcggagctgtggcctcaggaatgagaaggactattgctgggaatatttcctgtcctca
aacaccatgcagatgctgcataacatgaaagggcagtttgctgagcatctccttgctgct
ggatttgtgaatagtagaaaccccaaggatcccaaatctaacaccaactcaggtaatgag
aagctgctcaaagcagtcatctgtgctggcctctatcccaaagtggcaaagatccggccc
agcttcagcaaaaagagaaaaatggtgaaagtttgcaccaagacagatggatcagttaat
atccatcccaaatctgtgaatgtggaggaaaccgagttccattataactggcttgtgtac
catttgaagatgaggaccagcagcatttacctgtatgattgtacagaggtgtctccatac
tgcctcttgttctttggaggggatatatccattcagaaggataaggaccaggacaccatc
gctgtggatgagtggattgttttccagtctccagaaaaaatagcaaacttggtcaagaaa
ttgagaaaagaactcgatgatcttctacaagagaagatagaaaagccccatccggtggac
tggcaggacattaagtgcagggacacagcagtgctgacagccatcatagacctgatcacc
acgcaggagaacgagggcgtcaggaacttcgcgccgcgcttccagggcgagcgctacagc
tga
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