KEGG   Thermococcus guaymasensis: X802_03400
Entry
X802_03400        CDS       T04184                                 
Name
(GenBank) RNA-binding protein
  KO
K03679  exosome complex component RRP4
Organism
tgy  Thermococcus guaymasensis
Pathway
tgy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tgy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    X802_03400
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tgy03019]
    X802_03400
Messenger RNA biogenesis [BR:tgy03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     X802_03400
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     X802_03400
SSDB
Motif
Pfam: ECR1_N_2 KH_6 RRP4_S1 KH_1 ECR1_N KH_2 RRP40_S1 KH_KhpA-B KH-I_KHDC4-BBP
Other DBs
NCBI-ProteinID: AJC71314
UniProt: A0A0X1KJ58
LinkDB
Position
complement(592730..593494)
AA seq 254 aa
MRRIFVKPRELVVPGTLLAQGPFKNGRGTFREGNRIYSTVVGLVEIRGDMIRVIPLEGPY
IPEVGDNVLGKIVDVRFSNWTVDIGAPYQANLRVQDAVEERIDLLKTDLRKIFDIGDIIY
AKVKAFNEVNQIDLTTKGMPFRGGPLRGGQLVTITPSKVPRVIGKGGSMINMIKKLTGTR
IIVGQNGWVWVSGKNDELEKLAVEAILKVDRESHVQGLTDRVKEFLLSRLRDLKEKGIIE
VMPQLEENDEGEEK
NT seq 765 nt   +upstreamnt  +downstreamnt
atgaggaggatttttgtaaaaccaagggagttggtggttcccgggacacttttggcccag
gggccatttaagaacggaagagggactttcagggaaggcaacaggatatattcaactgtg
gtggggcttgttgagatcaggggggacatgatacgggtcataccgcttgaaggtccgtac
atcccagaggttggagacaacgtcctcggtaagatcgttgatgttaggttctccaactgg
actgtggacataggggcgccataccaggcaaacctccgcgttcaagacgctgtggaagag
cgcatagacctgctcaagaccgatctgaggaagatctttgacataggggacatcatctac
gccaaggtgaaggcattcaacgaggtcaaccagattgacctgacgaccaagggaatgccc
tttaggggcggccctctgaggggcggccagctcgttaccattaccccatcaaaggttcct
agggtcatcggaaagggcggctcaatgatcaacatgatcaagaagctaactggaacgagg
atcattgtgggccagaacggatgggtctgggttagcggaaagaacgacgagcttgagaag
ctggccgttgaagcgatcctgaaggttgaccgtgaaagccacgttcagggactgaccgac
agggttaaggagttccttctctcccggctcagggatctcaaagagaaaggaataatcgaa
gtgatgccccagctggaggaaaatgacgagggtgaagaaaaatga

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