Thermococcus guaymasensis: X802_03400
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Entry
X802_03400 CDS
T04184
Name
(GenBank) RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
tgy
Thermococcus guaymasensis
Pathway
tgy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X802_03400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgy03019
]
X802_03400
Messenger RNA biogenesis [BR:
tgy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
X802_03400
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
X802_03400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
RRP4_S1
KH_1
ECR1_N
KH_2
RRP40_S1
KH_KhpA-B
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AJC71314
UniProt:
A0A0X1KJ58
LinkDB
All DBs
Position
complement(592730..593494)
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AA seq
254 aa
AA seq
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MRRIFVKPRELVVPGTLLAQGPFKNGRGTFREGNRIYSTVVGLVEIRGDMIRVIPLEGPY
IPEVGDNVLGKIVDVRFSNWTVDIGAPYQANLRVQDAVEERIDLLKTDLRKIFDIGDIIY
AKVKAFNEVNQIDLTTKGMPFRGGPLRGGQLVTITPSKVPRVIGKGGSMINMIKKLTGTR
IIVGQNGWVWVSGKNDELEKLAVEAILKVDRESHVQGLTDRVKEFLLSRLRDLKEKGIIE
VMPQLEENDEGEEK
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggatttttgtaaaaccaagggagttggtggttcccgggacacttttggcccag
gggccatttaagaacggaagagggactttcagggaaggcaacaggatatattcaactgtg
gtggggcttgttgagatcaggggggacatgatacgggtcataccgcttgaaggtccgtac
atcccagaggttggagacaacgtcctcggtaagatcgttgatgttaggttctccaactgg
actgtggacataggggcgccataccaggcaaacctccgcgttcaagacgctgtggaagag
cgcatagacctgctcaagaccgatctgaggaagatctttgacataggggacatcatctac
gccaaggtgaaggcattcaacgaggtcaaccagattgacctgacgaccaagggaatgccc
tttaggggcggccctctgaggggcggccagctcgttaccattaccccatcaaaggttcct
agggtcatcggaaagggcggctcaatgatcaacatgatcaagaagctaactggaacgagg
atcattgtgggccagaacggatgggtctgggttagcggaaagaacgacgagcttgagaag
ctggccgttgaagcgatcctgaaggttgaccgtgaaagccacgttcagggactgaccgac
agggttaaggagttccttctctcccggctcagggatctcaaagagaaaggaataatcgaa
gtgatgccccagctggaggaaaatgacgagggtgaagaaaaatga
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