Thermococcus sp. AM4: TAM4_309
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Entry
TAM4_309 CDS
T01638
Name
(GenBank) Probable exosome complex RNA-binding protein 1
KO
K03679
exosome complex component RRP4
Organism
tha
Thermococcus sp. AM4
Pathway
tha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TAM4_309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tha03019
]
TAM4_309
Messenger RNA biogenesis [BR:
tha03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TAM4_309
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
TAM4_309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
RRP4_S1
KH_1
ECR1_N
KH_2
RRP40_S1
KH_KhpA-B
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
EEB74021
UniProt:
B7R2M5
LinkDB
All DBs
Position
complement(1327906..1328670)
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AA seq
254 aa
AA seq
DB search
MRRIFVKPRELVVPGTLLAQGPFKNGRGTFREGNRIYSTVVGLVEVRGDLIRVIPLEGPY
IPEVGDNVLGKIVDVRFSNWTVDIGAPYQANLRVQDAVEERIDLLKTDLRKIYDIGDIIY
AKIKAYNEVNQIDLTTKGMPFKGGPLRGGQLVTITPSKVPRVIGKGGSMINMIKKLTGTR
IIVGQNGWVWVSGKNDELEKLAVEAILKVDRESHTQGLTDRVKEFLLSRLRDLKERGVIE
EIPQLDENDEGEGK
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggatttttgtaaaaccaagggagttagtggttcccgggacgctgttggcccag
ggaccctttaagaacggaagaggaaccttcagagaagggaacaggatatactcgactgtg
gtaggacttgttgaggtcaggggagaccttatacgggttataccccttgagggaccatac
atacccgaggtcggtgacaacgtcctcggaaagatcgtggacgtcaggttctccaactgg
accgttgacatcggagcgccgtaccaggccaaccttcgcgttcaagatgcagttgaggag
cgcatagacctgctcaaaaccgatctgaggaagatctacgacatcggtgacataatctac
gcgaagatcaaggcctacaacgaggtcaaccagatcgacctgacgaccaagggcatgccc
ttcaagggcggcccgctgaggggaggtcagctcgtcacgataaccccgtccaaggttccg
agggtcatcggaaagggaggctcgatgatcaacatgatcaagaagctgaccggaacgagg
atcatagtgggccagaacggctgggtctgggtgagcggcaagaacgacgagctcgaaaag
ctggccgtggaggctatcctcaaggttgaccgcgagagccacacccagggactcaccgac
agggttaaggagttcctcctctcccggctcagggacctcaaggagaggggagtgatcgag
gagataccccagcttgatgagaacgacgagggtgaaggaaaatga
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