Thermococcus sp. AM4: TAM4_8
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Entry
TAM4_8 CDS
T01638
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tha
Thermococcus sp. AM4
Pathway
tha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TAM4_8
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tha03019
]
TAM4_8
03009 Ribosome biogenesis [BR:
tha03009
]
TAM4_8
Enzymes [BR:
tha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TAM4_8
Messenger RNA biogenesis [BR:
tha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TAM4_8
Ribosome biogenesis [BR:
tha03009
]
Prokaryotic type
rRNA helicases
TAM4_8
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrA_inter
Utp25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
EEB73720
UniProt:
B7R3D0
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All DBs
Position
complement(1103548..1104726)
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AA seq
392 aa
AA seq
DB search
MSFEELGLSESSLEAVKRKGFETPTDIQREVIPRLLEGDVDIIGQSQTGTGKTAAFALPI
IEAIDPKEKTVQAIILTPTRELALQVADEIKSLRGKKRVYVYAIYGGQPIGPQIRALERG
VHVVVGTPGRVLDHLNRGTLDLSSVRFFVLDEADRMLDMGFVDDIEEIMRRAPEEKRILM
FSATMPMGILLLAKKYMRNPEVVLVSRDEIVPEMVDQEYVEVLPARKYEKLKEVLEEGFY
GIIFCHTKRETRELSERLRRDGFRADALNGDMSQAARERTFNRFKEGKINVLVATDVAAR
GLDVREISHVINYSLPMNPEQYIHRIGRTGRMGKRGKAITFLEPGEIGRFRGIARKARVE
VRRSHLSERIPKRFRDEDLEREYRRRWGRRRF
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaagaattgggcttgtcagaatcaagtttagaggccgttaaaaggaagggt
tttgaaaccccaaccgacatccagagggaagtaatcccccgtcttcttgagggcgacgtt
gatataatcggtcagtctcagacgggaaccggcaaaactgccgcctttgcactccctata
atcgaggcaatcgatccgaaggagaaaacagtgcaggcgataatactcacccccacgagg
gagcttgccctccaggttgcggacgagatcaaaagcctccgcgggaagaagagggtttac
gtctacgccatctacggcggccagccgatagggccgcagataagggccctcgagaggggc
gttcacgtggtcgtcggaacgcccggtagggtgctcgatcacctgaacaggggcactctg
gacctcagctcggtgaggttcttcgtgcttgacgaggctgatagaatgctcgacatgggt
ttcgttgatgacatcgaggagataatgaggcgcgcacccgaggagaagaggatcctcatg
ttctcggcgacgatgccgatggggattctcctcctggcaaagaagtacatgcggaacccc
gaagtcgttctcgtgagcagggacgagatagtgcccgagatggtcgatcaggagtacgtg
gaagtccttcccgcgagaaagtacgagaagctgaaagaggttcttgaggaagggttttac
ggcataatcttctgccacaccaagagggagacccgggaactgagcgagaggctgaggagg
gacggtttcagggccgatgccctcaacggggacatgagccaggccgcgagggagagaacc
ttcaaccgctttaaggaggggaagatcaacgttctcgttgccacggatgttgccgcgagg
ggcctcgacgtcagggagataagccacgtgataaactactcccttccaatgaacccggag
cagtacattcacagaataggaagaacgggcaggatggggaagaggggaaaggccattacc
ttcctcgaacccggtgaaatcggaaggttcaggggcatagcgaggaaagcgagggttgaa
gtgaggagatcccacctgagcgagagaattcccaagcgcttcagggatgaagaccttgag
agggaataccggcggagatggggaaggagaaggttctga
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