Thermococcus sp. AM4: TAM4_942
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Entry
TAM4_942 CDS
T01638
Name
(GenBank) DNA repair helicase Rad3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
tha
Thermococcus sp. AM4
Pathway
tha03022
Basal transcription factors
tha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tha00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
TAM4_942
09124 Replication and repair
03420 Nucleotide excision repair
TAM4_942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tha03021
]
TAM4_942
03036 Chromosome and associated proteins [BR:
tha03036
]
TAM4_942
03400 DNA repair and recombination proteins [BR:
tha03400
]
TAM4_942
Enzymes [BR:
tha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
TAM4_942
Transcription machinery [BR:
tha03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
TAM4_942
Chromosome and associated proteins [BR:
tha03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
TAM4_942
DNA repair and recombination proteins [BR:
tha03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
TAM4_942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HBB
Helicase_C_2
DEAD_2
ResIII
DEAD
AAA_30
Antimicrobial17
AAA_19
AAA_11
Motif
Other DBs
NCBI-ProteinID:
EEB74997
UniProt:
B7R071
LinkDB
All DBs
Position
complement(116058..117980)
Genome browser
AA seq
640 aa
AA seq
DB search
MTELEYLPYRPRPHQLEFIELVRDAVERGENAIIEAPTGFGKTVSVLAGVLPVAKELGLK
VLYLARTHRQMDRVIEELKAINGKAKVSGVEMRSRKELCLHSYLREYTTDAYTAMVVCKN
LRKSGKCPFYENEKKKKAELDELVNFFLETPASPVEVLNYSETLEICPYDVTRLVAYKAD
VIVASYLYALNPTIRENFLTYLDLDYSDLIVIFDEAHNLPDQAISALSDRMSIHTVNRAI
KEADEYREHEIANFLSIFGKGLEILYSEKLGNRDVEETPIAPELIFGHLMNVLGLDTRWL
VKTLNEMVAVGDAIREDRINKNKPPRSYIGRVGEFLLLWLSLIGRDDYLFLLSREKGLSL
ELVALDPSRALSFIRDVQSAIFMSGTLTPLEAFRDVMGIEKARLKKFPRMVKRENAQVLV
AKDVSTRGEERSMELYRKMGDYIVEAVRLIPKNVGVFTASYEVLQGLLSANLQVRLEETG
KAVFIEKQGASSRENDLLVAQFKAHARSGGAVLLGVMGGRNSEGQDYSGDEMNGVILVGI
PYARPTPRVQAQIRYFERKFPGKGRYYGYYLPAHRKLVQAAGRVHRSAEEKGSIIILDYR
VLWRNVRKDFPDWMVETMKPVDLARMRLYLRRFWGTPAKG
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaactcgagtacctgccctacaggccccggccgcatcagctggagttcatcgaa
ctggttagggacgcagttgagaggggcgagaacgccatcatcgaggcgccgacgggcttt
ggaaagaccgtcagcgttctggcgggcgtcctcccggtcgccaaagagctcggtttaaag
gtcctctacctggcaaggacgcacaggcagatggacagggttatagaggagctcaaggcg
ataaacgggaaggcgaaggtttcgggcgtcgagatgaggagcaggaaggagctgtgcctt
cacagctacctgagggagtacaccaccgacgcctacaccgccatggtggtctgcaagaac
ctgcgtaagagcgggaagtgccccttctacgagaacgagaagaagaaaaaggccgagctc
gatgaactggttaacttcttcctcgaaaccccggccagtccggtcgaggtgctcaactac
tcggaaacgcttgagatatgcccctacgacgttaccaggctggtagcctacaaagccgat
gtaatcgtcgcgagctacctctacgccctcaaccccacaataagggagaacttcctgaca
tacctcgacctcgattactccgacctgatagtgatctttgacgaggcccacaacctgccc
gaccaggcgatctcggccttaagcgacaggatgagcatccacacggtgaacagggcgatc
aaagaggccgacgagtacagggagcacgagatagccaacttcctcagcatattcgggaag
ggccttgagatcctctactcggagaagctcggcaacagggatgttgaggaaacaccgata
gcgcccgagctaatattcggccacctcatgaacgtcctcggcctcgatacgaggtggctc
gtcaaaaccctgaacgagatggtggccgttggggatgcgataagggaagacaggataaac
aagaacaagccgccgaggagctacataggaagggtcggggagttcctcctgctgtggctc
tccctcatcggcagggacgattacctcttccttctcagcagggagaagggcttaagcctt
gagctcgttgctctggatccctcaagggcattgagcttcatccgggacgttcagagcgcg
atattcatgtccggcacgctgacacctctggaagcattccgcgacgtcatgggcatcgaa
aaagccaggctgaagaagtttccaagaatggtgaagcgcgaaaacgcgcaggttctggtg
gccaaggacgtctcgacgcgcggcgaggagcgctcgatggagctctacagaaagatgggc
gattatatcgtcgaggccgttcggctgatccccaagaacgtcggcgtcttcaccgcctcc
tatgaggttctccagggcctgctctcggcgaaccttcaggtcagacttgaggagacggga
aaggcggtctttatcgagaagcagggggcgagctcaagggagaacgacctcctcgttgcc
cagttcaaggcccacgcgaggagcggaggagcggttttgctcggcgtcatgggcgggagg
aacagcgagggacaggattactcaggcgacgagatgaacggggtcatactggtcgggatt
ccctacgcgaggccaactccgcgcgtccaggcccagataaggtacttcgagcggaagttc
ccgggaaagggccgatactacggctactacttgccggcccacaggaagctcgtccaggcc
gccggaagggttcaccgctcggcggaggagaagggctcgataataatcctcgactacagg
gttctgtggaggaacgttagaaaggacttccccgactggatggtagaaacgatgaaaccc
gtcgatctggcgaggatgcggctttacctgagaagattttggggaacccccgcgaagggt
taa
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