Thalassococcus sp. S3: CFI11_00085
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Entry
CFI11_00085 CDS
T05844
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
thaa
Thalassococcus sp. S3
Brite
KEGG Orthology (KO) [BR:
thaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thaa03400
]
CFI11_00085 (addB)
Enzymes [BR:
thaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFI11_00085 (addB)
DNA repair and recombination proteins [BR:
thaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
CFI11_00085 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
QBF29614
UniProt:
A0A4P6MDZ1
LinkDB
All DBs
Position
complement(15424..18360)
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AA seq
978 aa
AA seq
DB search
MFEPSKTPRVFALPPGVDFPASLVHGLSERMQGMPPTALAQVELIVNTRRMARRLREIFD
DGPARLLPRIKLLNEVGEIEDRIALPNPVSPLRRRLEIAQLVDRLLQRQPDLAPRASLYD
LADGLAELLDEMQGEGVLPQAISDLDVTDLSGHWSRAQTFIGIVQAFFDNEEAGLDGQSH
LRRLTEHLVDRWDREPPQHPVIVAGSTGSRGTTMMLMEAVSRLPQGALVLPGFDFDLPSS
IWSELADPMVSEDHPQYRFRALMVNLGIKAAEIAKWRDDQPSAPARNRVVSLALRPAPVT
DAWLDEGPDLPKLEPAFEQVTWVEAPSPRDEALAIALRLREAAETGQTAALITPDRMLTR
QVTAALDRWDLLPDDSAGQPLQLAPPGRFLRHVAGLFSRQLTSEMLLTILKHPLCHDGAD
RNEHLLLTRDFELHVRSKGIPFPEPEPLAAWAEAHNNPIAARWAKWVTDAFCDRIVDGEK
PLTRWVAHLRNVAEVIARGSGDAPDLTLWDKNAGIKALSVLDALEQEADHGGQMEARVFA
DLLGALLSREEVRDRDAPHPGIMIWGTLEARVQGADLLILGGLNEGTWPEAAKPDPWLNR
QMRKDAGLLLPERRIGLSAHDFQQAIAAREVWLTRAIRSDDAQSVPSRWINRLSNLLGGL
PALKGPETLAAMKARGDTWLSWAATLEEAPLTAPAPRPSPRPPVTARPRKISVTDVKRLI
RDPYAIYAKHVLRLRRLDPLVQAPGPLLRGVVVHEVLEAFIRATLEDRTRLSRDHFLALA
DTQLRSRVPWPTARVMWQARLGRIADIFLQAEIERQTEARPFAFERRGRVAVSDPAFTLE
GVADRIDMDASGRLRIYDYKTGTPPSKNEQKYFDKQLLLEAAMAEKGGFFDLDPTPVSRA
VYLGLGPGAAESAAPLADEPAEKVWAQFIGLIGAYFEPNQGYTSRLKMQKDTDIGDYDQL
ARFGEWDLTDQPVPVDLA
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
ctgtttgaaccgtcaaagacaccgcgcgtctttgctctcccccccggtgtcgattttccc
gcctcgcttgttcacgggctgtctgagcgcatgcagggcatgccgccaaccgccctcgcc
caggtcgaactgatcgtgaacacacgtcgtatggccaggcgcctgagagagattttcgac
gatggcccggcgcggcttttgccccgcatcaagctcttgaacgaggtgggagagatcgag
gatcgcatcgctctccccaatcccgtgtcaccgctgcgacggcggttggagattgcccag
cttgtcgacaggttgttgcaacggcaacccgatctggcgccgcgcgcatccctctacgat
ctggcggatggattggccgagcttcttgacgaaatgcaaggtgaaggtgtcctgccgcaa
gccatttcagatctcgatgtcaccgacctttcggggcactggtcccgcgcacagaccttt
atcgggatcgtacaggccttttttgacaatgaggaggcgggtctagacgggcaatcgcat
ctgcgtcgcctcaccgagcatctggtcgaccgttgggaccgggaaccgccccagcatccg
gtgatcgttgccggttccaccggatcccgcggcaccacgatgatgcttatggaagcagtg
tcacgtcttcctcaaggcgctttggttctaccgggtttcgatttcgacctgccctcgtca
atctggtccgaactcgctgatccgatggtgtccgaagaccacccccaataccgctttcgt
gcgctgatggtaaaccttgggatcaaggccgctgagatcgcaaagtggcgcgatgaccaa
ccgtccgcgccggcacgcaaccgggtcgtttcccttgcgctcagacccgcccccgtaacg
gatgcgtggttggatgaagggccggatttacccaagttagagcctgctttcgaacaggtc
acgtgggtggaggcaccctctccccgtgatgaggcgttggcaatcgcgttacgcttgcgc
gaggctgccgagacgggccagacggcggccctgatcacgccggacaggatgttgacgcgg
caggtgacggcggcgctggaccgttgggatttgctgccggatgacagcgccggccaaccc
ctgcagcttgcgccaccgggacggttcttgcggcatgtggcaggtttgttctcgcggcaa
ctgacgtccgagatgttgctgaccatcctcaagcatccactgtgtcatgacggcgcggac
cggaacgaacatcttctcctgacgcgtgacttcgaacttcatgtccgcagcaagggcatt
cctttccctgaacccgaaccgctggccgcctgggccgaagcccataacaatccgattgca
gcgcggtgggccaagtgggtgaccgacgccttttgcgatcggattgtagatggggagaag
cctctgacgcgctgggtcgcacatctgcggaacgtggccgaagtcatagcgcggggcagt
ggcgacgcaccggatctcacgctttgggacaagaacgcgggcataaaggcgctatcggtc
ctcgacgcgctggagcaagaggcggatcacggcggacagatggaggcgcgtgtcttcgcg
gatcttctgggtgccctgctgtcacgggaagaggtgcgagaccgcgatgcaccccacccc
ggcatcatgatctggggcacccttgaggcccgcgttcagggcgccgaccttttgatcctt
ggcggcctgaacgaaggcacctggccggaagccgcgaaacccgatccgtggttgaaccgc
cagatgcgcaaggatgccgggctccttctgcccgagcggcgcatcggcctgtcggcgcac
gattttcagcaggccatcgccgcgcgggaggtttggctgacccgggcaatccgatctgac
gacgcgcaaagcgttccgtcccgctggatcaaccggctctccaatcttcttggcggtctt
cccgcgttgaaagggcccgagacgctggccgcgatgaaagcacgcggagacacctggcta
tcctgggcggcaacgcttgaagaggcgccattgaccgcgccggcgccgcgtccatcgccc
cgtcctccggtcacggcgcgccctcgcaagatttcggtcaccgatgtcaagcgcctgatc
cgggatccttacgcaatctatgccaaacatgtgctgcgcctcagacggctagatccgctt
gttcaggcgcccggtccgctactgcggggggttgtcgttcatgaagtgctcgaagcgttc
attcgcgccacgctggaggaccgaaccaggctgtcgcgggaccacttccttgccttggca
gacacacaacttcggtctcgggtgccctggcctacggcgcgggtgatgtggcaggcccgc
cttggtcggattgccgacatctttctgcaggccgaaatcgagcgccaaaccgaagcgcgc
ccgtttgcgttcgagcggcgcggacgggttgcggtttcggacccggcattcaccctggaa
ggtgtggccgaccgcatcgacatggatgcgtcgggacggcttcggatctacgattacaag
accggtacgcctccttcaaagaacgagcagaaatattttgacaagcaactgctgctggaa
gccgcaatggctgaaaagggcggtttctttgacctggatccgacgcctgtcagccgcgca
gtttaccttggtctggggcccggagcagccgaaagcgccgcaccgctggcggatgaaccc
gccgaaaaggtctgggcccagttcatcggactgatcggggcgtatttcgagcccaatcaa
gggtacacgtccaggctcaagatgcagaaggacaccgatatcggcgactacgatcaactc
gcccggtttggggaatgggatctcactgaccagcccgttccggtggaccttgcatga
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