Thalassococcus sp. S3: CFI11_10300
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Entry
CFI11_10300 CDS
T05844
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thaa
Thalassococcus sp. S3
Pathway
thaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFI11_10300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thaa03019
]
CFI11_10300
Enzymes [BR:
thaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFI11_10300
Messenger RNA biogenesis [BR:
thaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFI11_10300
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
ERCC3_RAD25_C
AAA_22
Utp25_C
P-loop_SecA
Cas3-like_C_2
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
QBF31604
LinkDB
All DBs
Position
2042249..2043511
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AA seq
420 aa
AA seq
DB search
MTEFDMMGLPDRLTRRIKAMGLTDPTPIQSRAIPQALDGRDVVGLAQTGTGKTLAFGLPL
VAQMLEYGRKPERQTVRGLVLAPTRELAGQIVQNLRALVEDTPLKVGLVVGGQSINAQIK
RLERGTDILVATPGRLIDLMDRKALRLDQTAFLVLDEADQMLDLGFIHALRKIAGMLPSE
RQTMLFSATMPKQMNEIAQSYLTHPVRVEVSPPGKAADKITQAVHFVAKAEKTNLLIELL
DAHRDERAIVFGRTKHGSEKLMKLLEKAGYAAASIHGNKSQGQRDRALKAFKSGEIKVLV
ATDVAARGLDIPDVKHVYNYDLPNVPDSYVHRIGRTARAGKDGAAIAFCAPDEMGELKAI
QKVMGISIPVASGRPWEPIQAPAKPKGRGGPAGKPGGKPGGRPNRRRRRPGRSGSGAKAA
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaattcgatatgatgggtctgcctgaccggctgaccaggcgcatcaaggccatg
ggcctgaccgacccgaccccgatccaaagccgggccattccacaggctttggacggtcgc
gatgtcgtcgggctcgcccagacgggcaccggcaagacattggcctttggattgccgctg
gtcgcccagatgctggaatatggccgcaagccggaacgccagaccgtgcgcgggctggtg
ctggcgcccacacgtgaactggccgggcagatcgtgcaaaacctgcgcgcgctggtcgag
gacacgccgctcaaggtggggctggtcgtgggcggccagtcgatcaatgcgcagatcaag
cggctggagcggggtacggacattctggtggcaactccggggcggctgatcgacctgatg
gatcgcaaggcgctgaggctggatcaaacggcgtttctggtgctggacgaggccgaccag
atgctggatctgggtttcatccacgcgcttcgcaagatcgccggcatgctgccgtcagag
cgtcagacgatgcttttctctgcgaccatgcccaagcagatgaacgagattgctcaaagc
tatctgacccatcctgtgcgggtggaggtctcgccgccgggcaaggcggcggacaagatc
acgcaggctgtccatttcgtggccaaggcagagaaaacgaacctgctgatcgaattgctg
gatgcgcaccgcgacgagcgggcgatcgtgttcgggcggaccaagcacggctcggaaaag
ctgatgaaacttttggagaaggcgggttacgccgccgcttcgatccacggcaacaagagc
cagggccagagagaccgcgcgctcaaggcattcaaatccggcgaaatcaaagtgttggtc
gccacggatgtggcggcgagggggctggacatcccggatgtcaaacacgtttacaactac
gatctgcccaacgtgcccgacagctatgtccacaggatcgggcgcacggcacgggcgggc
aaggacggtgctgccattgccttttgcgcaccggacgagatgggagagctgaaagcgatc
cagaaggtgatggggatttcgatacccgtggcatcgggccgtccctgggaaccgatccag
gcgcccgcgaaaccaaaggggcgcggcgggccagccggcaagcccgggggcaaaccgggt
ggccgaccgaaccggcgccgtcgcaggccgggacggagcggcagcggcgcgaaggcggcg
taa
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