Thalassococcus sp. S3: CFI11_10995
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Entry
CFI11_10995 CDS
T05844
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
thaa
Thalassococcus sp. S3
Pathway
thaa02024
Quorum sensing
thaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFI11_10995
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
CFI11_10995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thaa03019
]
CFI11_10995
03036 Chromosome and associated proteins [BR:
thaa03036
]
CFI11_10995
Messenger RNA biogenesis [BR:
thaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
CFI11_10995
Chromosome and associated proteins [BR:
thaa03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
CFI11_10995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
LSM
AcMNPV_AC11
Motif
Other DBs
NCBI-ProteinID:
QBF31743
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All DBs
Position
2183997..2184236
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AA seq
79 aa
AA seq
DB search
MASDRQNLQDAFLNHVRKTKVPVTIFLINGVKLQGVITWFDNFCVLLRRDGQSQLVYKHA
ISTIMPAQPISLYEGEDAS
NT seq
240 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggacagacagaatcttcaggacgcgttcctgaaccatgtacgtaaaacaaag
gttcccgttacaattttcctgatcaatggtgtgaaactgcagggtgtgattacctggttt
gacaatttctgcgtgttgctgcgccgggatggtcaatcccagctggtctacaagcacgcc
atttccacaatcatgcccgcacagccgatcagcctttatgagggcgaagacgcctcttga
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