KEGG   Thalassococcus sp. S3: CFI11_10995
Entry
CFI11_10995       CDS       T05844                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
thaa  Thalassococcus sp. S3
Pathway
thaa02024  Quorum sensing
thaa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:thaa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CFI11_10995
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CFI11_10995
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:thaa03019]
    CFI11_10995
   03036 Chromosome and associated proteins [BR:thaa03036]
    CFI11_10995
Messenger RNA biogenesis [BR:thaa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CFI11_10995
Chromosome and associated proteins [BR:thaa03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CFI11_10995
SSDB
Motif
Pfam: Hfq Hfq_1 LSM AcMNPV_AC11
Other DBs
NCBI-ProteinID: QBF31743
LinkDB
Position
2183997..2184236
AA seq 79 aa
MASDRQNLQDAFLNHVRKTKVPVTIFLINGVKLQGVITWFDNFCVLLRRDGQSQLVYKHA
ISTIMPAQPISLYEGEDAS
NT seq 240 nt   +upstreamnt  +downstreamnt
atggcttcggacagacagaatcttcaggacgcgttcctgaaccatgtacgtaaaacaaag
gttcccgttacaattttcctgatcaatggtgtgaaactgcagggtgtgattacctggttt
gacaatttctgcgtgttgctgcgccgggatggtcaatcccagctggtctacaagcacgcc
atttccacaatcatgcccgcacagccgatcagcctttatgagggcgaagacgcctcttga

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