Thalassotalea sp. LPB0316: LP316_02190
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Entry
LP316_02190 CDS
T08426
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thab
Thalassotalea sp. LPB0316
Pathway
thab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LP316_02190 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thab03021
]
LP316_02190 (rpoC)
03400 DNA repair and recombination proteins [BR:
thab03400
]
LP316_02190 (rpoC)
Enzymes [BR:
thab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LP316_02190 (rpoC)
Transcription machinery [BR:
thab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LP316_02190 (rpoC)
DNA repair and recombination proteins [BR:
thab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LP316_02190 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
LPD39
DUF2267
Motif
Other DBs
NCBI-ProteinID:
QOL26142
UniProt:
A0A7L9S7W6
LinkDB
All DBs
Position
complement(490518..494735)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKQQNQTEEFDGIRIGLASPDQIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTEPGMTTLEKSQILTEEEYLDALEEHGDEFDAKM
GAEAVLALLEQIDLEGDIAQMREELPEIGSETKRKKITKRLKLMEAFAQSGNKPEWMIMS
VLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKLVEREGAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNVLSPANGDPIIVPSQDVVLGLYYLTRDRVNGKGEGMVFASEKEAEKAYRTG
VAELHARVKVRITEHIRNAEGELEAKTAVRDTTVGRAILWQVCPKGLPYDLIDQPLGKKP
ISRLINHAYRNLGLKDTVIFADHIMYTGFHYAMIAGASVGIDDMVIPDAKYSIIEGAEEE
VAEIQEQFEQGLVTAGEKYNKVIDIWSSANEKVSKAMMDNLSKEQIKNRDGEMEEQDSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEHDCGTEDGLLMTPLIEGGDVVEPLRERVL
GRVVAEDVLMPGTEDVLLTRNTLIDEGLCDLIEKHSIDQIKVRSIITCETDFGICAHCYG
RDLARGHMINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNTGTLKL
QNAKFVINSEGRAVITSRSSELTVIDELGREKERYKVPYGSVLAKNDGEAIEAGEIVANW
DPHTHPIITEVAGKIKFVDLIEGLTMTRQTDDLTGLSSIVVTDANQRSSAGKEMRPMVKL
VDEKGNDVMIAGTEIPAQYFLPGNAIVNLEDGAPVNIGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEKTGVIGFGKETKGKRRLLITQPSGEVYEEMIPKWRQLNVFEG
ESVIKGEVIADGPESPHDILRLRGVAAVANYIVNEVQDVYRLQGVKINDKHIEVIVRQMI
RKCEIIDAGDSEFLKGEVVEVANVNIANRELIAQGKQPAEIEMLMMGITKASLATESFIS
AASFQETTRVLTEAAVAGKKDSLRGLKENVIVGRLIPAGTGYSYHQERARKRNEALAAEE
VTVSQDEAAQALTDALNADGLGDAE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaagtttcttaagcaacaaaatcaaacagaagaattcgatggtatt
cgcatcggacttgcttcacctgatcaaattcgttcatggtcattcggtgaagttaagaag
ccagagacaattaactaccgtacgttcaagccagagcgtgacggtttattctgtgcacgt
attttcggcccagtaaaagactacgaatgtctttgtggtaaatacaagcgcttaaagcac
cgtggtgtaatttgtgaaaaatgtggtgttgaagtaacactaactaaagtacgtcgtgag
cgtatgggtcacattgaattagcaagcccagttgcccacatttggttcttaaaatcattg
ccatcgcgtatcggtttattattagacatgaccttacgtgatatcgagcgtgttttatac
ttcgaatcatatgttgttaccgaaccaggtatgacaacattagagaagagccaaatctta
acagaagaagaataccttgacgcgttagaagagcacggtgacgagttcgacgctaagatg
ggtgctgaagcggttcttgctttattagagcaaatcgaccttgaaggcgacatcgcgcaa
atgcgtgaagagttaccagaaatcggttctgaaactaagcgtaagaaaattactaagcgc
ttaaagttaatggaagcattcgcgcaatctggcaacaagcctgagtggatgatcatgtcg
gttcttccgatccttccaccagatttgcgtccattagtaccactagatggtggccgtttc
gcaacgtctgacctaaatgatttataccgtcgcgtaatcaaccgtaacaaccgtttgaag
cgtctattagacctagtagcaccagacatcatcgtgcgcaacgaaaagcgtatgttacaa
gagtctgttgatgcgttattagacaacggtcgtcgtggtcgtgcaattaccggttctaac
aagcgtccacttaagtcgcttgcagacatgatcaaaggtaagcaaggtcgtttccgtcaa
aacttacttggtaagcgtgttgactactcaggccgttctgttattaccgttggtccaaca
ttgcgtttacaccagtgtggtcttccgaagaagatggcacttgagctattcaagccattt
atctacggcaaattagaagcacgtggtttagcgactacaatcaaagcggctaagaaatta
gtagaacgtgaaggcgcagaagtatgggatgtattagacgaagttattcgtgaacatcca
gttatgcttaaccgtgcaccaacacttcacagacttggtatccaagcatttgaacctgta
ctgatcgaaggtaaagcgattcatcttcacccattagtttgtgcggcatacaacgccgac
ttcgatggtgaccaaatggcggtacacgttccattaacacttgaagctcaattagaagct
cgtgcgttaatgatgtcgacaaacaacgtattatctcctgcaaacggtgatccaatcatc
gtaccatcacaggacgttgttttaggtctttactacttgactcgtgaccgcgtaaacggc
aagggtgaaggtatggtttttgcctctgaaaaagaagcagaaaaagcctaccgcacaggt
gtagctgaattacacgcacgtgttaaagttcgtattacagagcatattcgcaacgctgaa
ggcgaattagaagcgaaaactgcggtacgcgatactacggtaggtcgtgcaattttatgg
caagtatgtcctaagggcctaccatacgatcttatcgatcagccattaggtaaaaagcca
atttctcgcttgatcaaccatgcataccgtaatctaggtcttaaagataccgttatcttt
gctgaccacatcatgtacacaggtttccactatgcgatgatcgccggtgcctctgtaggt
attgatgacatggttatccctgatgctaagtactcaatcatcgaaggtgctgaggaagaa
gtagcagaaatccaagagcagttcgagcaaggtcttgttactgcgggcgagaagtacaac
aaagttatcgatatttggtcatctgctaacgagaaagtgtcgaaagcgatgatggataac
ttatcgaaagagcaaatcaagaatcgtgacggtgagatggaagagcaagactcattcaac
tctatcttcatgatggctgactcgggtgctcgtggtagtgcggcacagattcgtcagcta
gcgggtatgcgtggtctaatggctaagccagatggctcaatcatcgaaacaccaatcacg
gctaacttccgtgaaggtctaaacgtattacagtacttcatctctactcacggtgcgcgt
aaaggtcttgccgatacggcacttaaaacagcgaactcgggttacctaactcgtcgttta
gttgatgttgcacaagatttagtcgtaactgagcatgattgtggcactgaagatggccta
ttaatgacaccattaattgaaggtggtgatgttgttgaaccattacgcgaacgcgtacta
ggtcgtgttgttgctgaagacgtattaatgccaggtacagaagacgtattacttacccgt
aacacgttaattgacgaaggtttgtgtgatttaattgagaagcactcaattgaccaaatc
aaagtacgttcaatcattacttgtgaaactgactttggtatttgtgcgcactgttacggt
cgtgacctagcgcgtggtcatatgatcaaccaaggtgaagcaattggtgttgtcgctgct
caatcaatcggtgagccaggtacacagttaacgatgcgtaccttccacattggtggtgca
gcatcacgtgcgtcagctgaaaactctgttcaagttaagaacacgggtaccttgaagtta
caaaacgctaagttcgttattaactcagaaggccgtgcagtaattacttcacgttcatca
gaactaactgttattgatgaattaggtcgtgagaaagagcgttataaagtgccttacggc
tcggtattagcgaagaacgacggcgaagcaattgaagctggtgaaatcgtagcgaactgg
gatccacatactcacccaatcattactgaggtagcgggtaagatcaaatttgttgaccta
attgaaggtttaacaatgactcgccagacagatgacctaactggtttatcaagcatcgtt
gttactgatgcgaaccaacgtagttctgcgggtaaagaaatgcgcccaatggttaagcta
gttgacgagaaaggtaatgacgtgatgatcgctggcactgaaattccagcacagtacttc
ttaccaggtaacgcgatcgttaaccttgaagatggtgcgccagttaatatcggtgacgcg
ttagcgcgtattccacaagagtcttcgaaaactcgtgatattaccggtggtcttccacgt
gttgctgacctattcgaagcgcgtaagccaaaagagcctgcgatccttgccgagaagacg
ggtgttatcggtttcggtaaagaaaccaaaggtaagcgtcgtctattaatcacgcaacca
agcggtgaagtttacgaagagatgattcctaagtggcgtcaacttaacgtgttcgaaggt
gaatcagtaattaaaggtgaagttatcgccgatggtcctgagtcgccacatgacatctta
cgtttacgtggtgttgcagcggttgctaactacattgttaacgaagtacaagatgtatat
cgtttacaaggtgtaaaaatcaacgataagcacatcgaagtaatcgttcgccagatgatc
cgcaagtgtgaaatcattgacgcgggtgattcagagttcttgaaaggtgaagttgttgaa
gttgcgaatgtaaacatcgctaaccgtgagttaatcgctcaaggtaaacaaccagctgaa
attgaaatgttaatgatgggtatcactaaagcatcattagcaactgagtcattcatctca
gcggcatcgttccaggaaacaacgcgcgttcttactgaagcagctgttgctggtaagaaa
gacagcttacgcggcttaaaagagaacgtaattgttggtcgattaatcccagcaggtaca
ggttactcgtatcaccaagagcgtgcgcgcaagcgcaacgaagcgctagcagctgaagaa
gtgacagtgtcacaagacgaagcagcacaagcgttaacggatgcattaaatgcagacggc
ttaggtgacgctgaataa
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integrated database retrieval system
