Thalassotalea sp. LPB0316: LP316_02195
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Entry
LP316_02195 CDS
T08426
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
thab
Thalassotalea sp. LPB0316
Pathway
thab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LP316_02195 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thab03021
]
LP316_02195 (rpoB)
03400 DNA repair and recombination proteins [BR:
thab03400
]
LP316_02195 (rpoB)
Enzymes [BR:
thab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LP316_02195 (rpoB)
Transcription machinery [BR:
thab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LP316_02195 (rpoB)
DNA repair and recombination proteins [BR:
thab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LP316_02195 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QOL26143
LinkDB
All DBs
Position
complement(494833..498861)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKSAQVMDYPFLLSIQLESFRKFIDIDPTGETGLEAAFRSIFPIK
SYSGSSELQYVSYRLGEPLFDVKECQIRGVTYSAPLRVKLRLVLYDKDAPAGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALDYSTEEILAMFYDTTAFEIKGDKMIME
LIPERLRGETATFDIKLPNGDVIVEQGRRITARHIRTLDKENVTELEVPADYIVGKVLSK
AYIDESTGEVIAEANAEITLELLAELSQAGHKTLDTLYMNEFDVGSYMSDTLRIDTTTNR
LEALVEIYRMMRPGEPPTKDAAEALFANLFFSLERYDLSTVGRMKFNRRVGLSEDTGEGV
LSNDDIISVMKTLIAIRDGKGETDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLDAVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSCYARTNDYGFLETPYRKIVDGVV
TDEVDYLSAIEEGNFVVAQANAEVDENGKLVDGLVPCRHKNEFTLMSAEQVQYMDVSPQQ
IVSVAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGMEKTIAVDSGVTAVAK
RGGVVDYVDASRIVVKVNEDEMVPGEAGIDIYNLTKYTRSNQNTCINQRPTCRVGEPVVR
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSMLISERVAQEDRFTTIHIQELSCI
ARDTKLGAEEITSDIPNVGESALSKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKAADVKDSSLRVPNSVSGTIIDVQIFTRDGVEKDQRALEIEEMQLKEVKKD
LGDEFSILEDGIYARAKKLLLSAGLNESDINSMSRDKWLVQNLSDEGQQAELEQIAEQYD
TIKEEFDKKYETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISNV
VPVEDMPYDQNGVPVDIVLNPLGVPSRMNIGQILETHLGMAARGIGEKIDRMIKAQQEVA
KLRSFLKEVYELGESRQEVDIDSFSDDEIMRLAENLRAGLPIATPVFDGASEKEIKELFK
LADMPESGQFILTDGRTGREFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNLVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELDQE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttactctgaaaagaaacgaattagaaaggactttggtaaaagtgcacaa
gtaatggattatccattcttgttgtccatccaactcgaatctttccgaaagttcattgat
attgatcctactggcgaaaccggtttagaagccgcgttccgttcaatctttccaattaaa
agctactcaggtagctcagaattacaatacgtaagctaccgtttaggtgagccattattt
gacgttaaagaatgtcaaattcgcggcgttacgtattctgctcctttacgtgtgaaatta
cgcttagtgctgtacgataaagacgcaccagctggcacagtaaaagatatcaaagagcaa
gaagtgtatatgggtgaaatcccattaatgacagagaacggtacgttcgttattaatggt
actgagcgtgttattgtttcgcaattacaccgttcaccaggtgttttctttgatcacgac
aaaggtaaaacacactcttcaggtaaagtgttatacaacgcacgtgtaatcccttaccgt
ggttcttggttagactttgagtttgacccgaaagataacttattcgtacgtattgaccgt
cgtcgtaaattaccggcgtcaattattttgcgcgctttagattactcaactgaagaaatc
ttagcgatgttctatgacacaacagcttttgaaatcaaaggcgacaagatgatcatggaa
ttaatcccagagcgcttacgcggtgaaacagcaaccttcgacattaaattaccaaatggt
gatgtcattgttgagcaaggtcgtcgtattacagcgcgtcacattcgtacattagataaa
gaaaatgttaccgaattagaagtaccagcagattacatcgtaggcaaagtgttatctaaa
gcttacatcgatgaatcaacgggtgaagttattgctgaagcaaatgctgaaattacctta
gagttattagctgagttaagccaagcaggccacaaaacattagacaccttatacatgaac
gaatttgatgttggttcatatatgtctgataccttgcgcatcgacacaacaactaaccgc
ttagaggccttagttgaaatttatcgaatgatgcgccctggtgagccaccaacaaaggac
gctgctgaagcgttatttgctaacctattcttctcattagagcgttatgacttatcaaca
gtaggtcgtatgaagttcaaccgtcgtgttggcttatcagaagataccggtgaaggcgta
ttatcaaacgacgacattatctctgtaatgaaaacgttaatcgcgatccgcgatggtaaa
ggcgaaacagatgatatcgatcacttaggtaaccgtcgtatccgtagcgttggcgaaatg
gcagaaaaccaattccgcgttggcttagttcgtgtagagcgtgctgtacgtgagcgttta
tcattaggtgatttagatgcagtaatgccgcaagacctaattaatgctaagccgatctct
gcagcggttaaagaattctttggttcatcacaactttctcagttcatggatcaaaacaac
ccgttatcagaagtaacacataagcgtcgtatttctgcattaggcccaggtggtttaacg
cgtgaacgcgcaggcttcgaagtacgtgacgttcacccaacccactacggtcgtgtttgt
ccaatcgaaacgccagaaggtccaaacatcggtctaattaactcgttatcttgttacgcg
cgtaccaacgattacggtttcttagaaacaccataccgcaagattgttgatggtgtggta
acggacgaagttgattacttatcggcaatcgaagaaggtaacttcgtggttgcacaggcg
aacgctgaagtagatgaaaacggtaaattagttgatggcttagtaccatgtcgtcacaaa
aacgaatttaccttaatgtctgctgaacaagttcagtatatggatgtatctccacagcaa
atcgtttctgtagcagcatcactaattccattcctagagcacgatgatgctaaccgtgcc
ttgatgggtgcgaacatgcaacgtcaagctgtacctacattaaaagctgataagccttta
gtcggtacaggtatggaaaaaactatcgcggtagactcaggtgtaactgcagttgctaag
cgcggtggtgttgttgattacgtagatgcatctcgtatcgtagtgaaagtaaatgaagat
gaaatggtgccaggtgaagctggtatcgatatctacaacttaactaaatacacgcgttct
aaccaaaacacatgtatcaaccaacgtccaacgtgtcgcgtaggtgagccagttgttcgt
ggtgatgtattagcagatggtccttcaactgacttaggtgacttagcacttggtcaaaac
atgcgtatcgcattcatgccttggaatggttacaacttcgaggattcgatgttgatttct
gagcgtgtagcgcaagaagaccgttttacaacgattcacattcaagaattatcttgtatc
gcacgtgacactaaattaggtgctgaagaaatcacttcagacattcctaacgttggtgaa
tcagcactgagcaagctagatgagtctggcgttgtttacattggtgctgaagttaaaggc
ggcgacatcttagtaggtaaagtaacgcctaaaggtgaaacgcaattaacaccagaagaa
aaactattacgtgcaatcttcggtgaaaaagcagctgacgtaaaagacagctcgttacgt
gtaccaaactctgtttcaggtactatcatcgacgtacaaatcttcactcgtgatggcgtt
gaaaaagatcaacgtgcattagaaattgaagaaatgcaattaaaagaagttaagaaagat
ttaggcgatgagttctctatcttagaagacggcatttacgcacgtgctaagaaactactc
ctttctgccggcttaaatgaatctgatattaactcaatgtctcgcgacaagtggttagtt
caaaacttatctgacgaaggtcaacaagctgaattagagcaaatcgctgagcagtacgac
acaatcaaagaagagtttgacaagaagtacgaaactaagcgccgtaagatcactcaaggt
gatgacttagcgcctggcgtattaaaaattgttaaagtttacttagcggttaagcgtcgt
attcagcctggtgataagatggctggtcgtcacggtaacaaaggtgttatctcaaacgta
gtacctgttgaagatatgccatatgaccaaaacggtgtgccggtagatatcgtgcttaac
ccgttaggtgtaccgtcgcgtatgaacatcggtcagatcttagaaactcacttaggtatg
gcggcacgcggtatcggtgaaaagattgatcgcatgatcaaagcacaacaagaagtggct
aaattacgcagcttcttaaaagaagtttacgagttaggtgagtctcgccaagaagttgat
attgatagcttctctgacgatgaaatcatgcgcttagcagaaaacttacgtgctggtctt
ccaatagctacaccggtattcgatggtgcgagcgagaaggaaatcaaagagctattcaag
cttgctgatatgcctgaaagtggtcagttcatcttaactgatggtcgtaccggtcgtgaa
tttgagcgtccagtgactgttggttacatgtacatgctgaaactaaaccacttagttgat
gacaagatgcatgctcgttcaaccggttcatactcactagttactcagcaaccactaggt
ggtaaagctcagttcggtggtcagcgtttcggtgagatggaggtatgggcacttgaagca
tacggtgctgcttacaccttacaagaaatgcttacggttaagtctgatgacgtgaacggt
cgtactaagatgtataagaacttagtagacggtgatcaccgtatggaacctggtatgcct
gaatcgttcaatgtattgcttaaagagatccgctctttaggtatcaacattgaattagat
caggaataa
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