Thalassotalea sp. LPB0316: LP316_03110
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Entry
LP316_03110 CDS
T08426
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
thab
Thalassotalea sp. LPB0316
Pathway
thab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LP316_03110 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thab03021
]
LP316_03110 (rho)
03019 Messenger RNA biogenesis [BR:
thab03019
]
LP316_03110 (rho)
Transcription machinery [BR:
thab03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LP316_03110 (rho)
Messenger RNA biogenesis [BR:
thab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LP316_03110 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
AAA
S1CSD-TOTE-2
FtsK_SpoIIIE
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QOL26309
LinkDB
All DBs
Position
complement(695181..696440)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKEKSINELVQLAESMKLEHLARHRKQDIIFAILKAHAKSGEDIFGGGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFSLRTGDTIQGKIRPPKDGERYFALLKVNEVN
FDRPENSRNKILFENLTPIHANERLGMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTLLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLTEHKKDVVILLDSITRLARAYNTVIPSSGKILTGGVDANALHRPKRF
FGAARNIEEGGSLTIIATALIETGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIHI
NRSGTRREELLTKPDELQKMWILRKIVHEMGEIDAMEFLIDKLAMTKTNDEFFDSMKRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaacttaaagaaaaatcgattaatgaattggtgcaacttgctgaatca
atgaaacttgagcatttagctagacaccgcaaacaagatattattttcgccattttaaaa
gctcacgctaaaagcggtgaagacattttcggtggtggtgtacttgagattttacaagat
ggttttggttttttacgctcggcagattcatcatacttagcagggcctgatgatatttat
gtctcaccgagtcagattcgccgctttagtttgcgcaccggtgatactattcaaggtaaa
attcgtccacctaaagacggcgagcgttactttgccctattaaaagttaatgaagttaac
ttcgaccgcccagaaaactctcgcaataaaatcttatttgaaaacttaacacctattcac
gccaatgaacgcttaggcatggagcgcggtaacggttcaactgaagatattaccgcacgc
gttttagacttagcatcacctatcggtaaaggtcagcgcggcttgattgttgcgccacca
aaagcgggtaaaaccttacttttacagaacattgcccaaagtattgcctataaccaccca
gagtgtgagttaatggtgttactgattgacgagcgtccggaagaagtgactgaaatgcaa
cgcctagttaaaggtgaagttgttgcatctacttttgacgagccagcgagtcgtcacgtg
caagtagctgaaatggttattgaaaaagctaagcgtttaactgaacacaaaaaagatgtg
gttatcttattagattctattacccgtttagcccgtgcctacaacacagttattccttca
tcgggtaaaattttaaccggtggtgttgacgctaacgctttacaccgtccgaagcgtttc
tttggtgctgcgcgtaatattgaagaaggtggtagcttaacgattatcgcaacagcgcta
attgaaaccggttcaaaaatggatgaagtgatttacgaggagtttaaaggtacaggtaat
atggaactacacctttctcgtaaaattgcagagaagcgcgtattccctgctatccacatt
aaccgcagtggcacgcgtcgcgaagaattattgactaaacctgacgaactacaaaaaatg
tggatattgcgcaaaatcgttcatgaaatgggtgaaattgatgcaatggaattccttatt
gataagttggcaatgaccaaaaccaatgatgaattcttcgactcgatgaagcgtcaataa
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