Thalassotalea sp. LPB0316: LP316_03120
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Entry
LP316_03120 CDS
T08426
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
thab
Thalassotalea sp. LPB0316
Pathway
thab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LP316_03120 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thab03019
]
LP316_03120 (rhlB)
Enzymes [BR:
thab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LP316_03120 (rhlB)
Messenger RNA biogenesis [BR:
thab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LP316_03120 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QOL26311
UniProt:
A0A7L9S7F3
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All DBs
Position
697228..698490
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AA seq
420 aa
AA seq
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MKKTHLSDKKFADLNLDPKVVAGLHAMGFEQCTSIQAKSLPVLIEGKDIAGQAQTGEGKT
IAFLAATFHRLMQSERPNNNNPRAIIMAPTRELAIQIQKDAIEMAKSTGLRVGVVYGGEG
YDSQRETLEKGVDILIGTCGRLIDYLKQGIYQLNNIEAVVLDEADRMFDLGFIKDIRYLF
RRMPEAKERLNMLFSATLSFRVKELAFEHMNDPVSVEIEPEQKTNLRISEELFYPSNEDK
MTLLQTLIEEEWPEKAIIFANTKHSCENVYNYLVADKHRVGLLTGDIPQKKRLNILESFK
KGNLDILVATDVAARGLHIPSVSHVFNYDLPDDCEDYVHRIGRTGRAGATGHAISLACEE
YVFNLPAIENYIEHTLPVSKYDPDALLTDLPKPKPRQRRHKPHNGGQNRTKTSYNKQRRN
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaacacacttatcagataaaaagtttgccgacttaaacctggatccaaaggta
gtggccggtttacatgccatgggctttgaacaatgcacctcaattcaggcaaaatcgttg
ccagtattaattgaaggtaaagacattgcaggccaagcacaaacaggtgaaggtaaaaca
attgcctttttagccgccacgttccatcgcttgatgcagtcagaacgaccgaacaataat
aatcctcgcgcgattattatggcgccaactcgagaacttgcgattcaaatccagaaagac
gctattgaaatggcgaaaagcacaggtttgcgcgtaggcgttgtctacggtggtgaaggt
tacgactcgcaacgagaaacgctcgaaaagggtgttgatattctgattggcacctgtggt
cgcttaatcgattacctaaagcagggtatttaccaattaaacaatattgaagcggttgtg
ctagacgaagccgaccgaatgtttgatttaggctttattaaagacattcgttacttgttt
agacgcatgcctgaagcgaaagagcgcttaaacatgttgttctctgccaccttgtcattc
cgggtaaaagaacttgcctttgagcacatgaacgatccggtcagtgttgaaattgagcca
gagcaaaaaaccaacctgcgcatttcagaagagctattttatccatcgaacgaagataaa
atgaccttacttcaaacactgatcgaagaagagtggccagaaaaagcgattatttttgcc
aacaccaaacactcatgtgaaaacgtctacaattaccttgttgccgacaaacaccgcgta
ggcctattaacaggtgatatcccacaaaagaaacgcttaaacattttagagagtttcaaa
aagggtaacttagatattttagtggcaaccgacgttgctgcccgtggtttacatattccg
tcggtaagtcacgtgtttaattacgacttacccgatgattgcgaagactacgttcaccgc
attggccgtactggtcgcgcgggagcgacggggcatgcgattagcttagcttgtgaggaa
tatgtttttaacttgccggcgatcgaaaactatatcgagcacaccttacctgttagtaaa
tacgatcccgatgctttattgaccgacttgcctaaaccaaaacctagacaacgtcgtcat
aaaccacataatggcggacaaaaccgtacaaaaacctcgtataacaaacaacgtagaaat
taa
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