Thalassotalea sp. LPB0316: LP316_05260
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Entry
LP316_05260 CDS
T08426
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
thab
Thalassotalea sp. LPB0316
Brite
KEGG Orthology (KO) [BR:
thab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thab03019
]
LP316_05260 (hrpB)
Enzymes [BR:
thab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LP316_05260 (hrpB)
Messenger RNA biogenesis [BR:
thab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LP316_05260 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_22
Cas3-like_C_2
ExsA_N
AAA_25
AAA_19
DUF4882
Motif
Other DBs
NCBI-ProteinID:
QOL26709
UniProt:
A0A7L9S9R1
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Position
1183042..1185573
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AA seq
843 aa
AA seq
DB search
MLAFKTRQVVFPIESIKSQVLTSLAQHPLTLLVAPPGAGKSTVLPLWLLEKPTQGKTLLL
QPRRVAAKNIALYLAKQLGEPVGQRIGYRLRNDTKVSSATELEVITEGVLIRLMQADPEL
SDVSCILFDEFHERSSQADFAFALARDIQDGLRDDLKLMLMSATLATQELTEQLPNANVL
ISEGKSHPVEIAYAPCPTQQFWRDHLIQCTSLAVSQHTGTALVFLPGRADIEKVAQALAQ
KLPNLEIACLFGDMPLADQQEAISPAQSGSTKVVLATNIAETSLTIDGVNLVIDSGLEKQ
AIFDQNTQTNRLSLTKISQASAIQRAGRAGRLMAGKCLRLYGQSDFERMAKHSPLAMLQA
DIVPIALEASRWGVAALKQLPLLTLPKAFVEQQAWQTLAQLGLTDTHHKLTKHGDACAKL
SCHPRFAHMIERAYQAEIAGETGFTLLACIVAAMLEQKDIFSASIGRNNASLHQRIDYLI
NQGEKRFGFIFKQIKQLFARYQGECQSTYQQLPISLTGVLVAWAFPERIAKARNQQGSYV
SLFNKGYQLDHEDTLCEHAFLAVAQLSQVEQKLTIRIACPISLEQIKQWQLAKQYTELVC
AYDAKLDKITANECQLLEQLVISRAAQSQALTQESVAQLWRQQIAQQGLAWLAWSEAAEQ
VKLRWQWLNRFQPQLGLPELTEPYLLAELDTWLLPYASECQSKKALDRLKLEELLLHLLD
YQQQQLLEKLAPTYYVGPTGRKCRITYDLINPPKVSLPMQEIYGLAQSPQIGDIDRGKGV
GLVLELMSPANRPIQITSDLSQFWQGSYKAVQKDMKASYPKHYWPDDPANAVPTNKTKRF
IKN
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgttagcttttaaaacgaggcaagtcgtgtttccaattgaatctataaaatcgcaggta
ttaacaagccttgctcagcatccgctaacattattagttgctcctccaggtgccggtaaa
tcaacggttttgcctttgtggttgcttgaaaagccgacacagggcaaaacacttttgctt
caaccgaggcgtgttgctgctaaaaatattgccttatatttggcaaagcaattaggtgag
ccggttggccagcgtattggttatcgcctgcgcaatgataccaaagttagctcggcaacc
gagcttgaggtgatcacagaaggggtcttgattcgtttgatgcaagccgacccagagctc
agtgatgtgagttgtattttatttgatgaatttcacgagcgctcaagccaagccgacttt
gcctttgccttagcgcgcgatattcaagatggcttgcgcgacgatcttaagctcatgtta
atgtcggcaacactggcaactcaagagctcaccgagcaattgcccaatgccaatgtgcta
ataagtgaaggtaaatcgcatccggttgaaatagcgtatgcgccttgtccaacccaacag
ttttggcgcgatcatttaattcaatgcaccagtctggccgttagccagcacacggggaca
gcattggtgtttctgccaggtcgagcggacattgaaaaagtcgcccaagcgttagctcaa
aaactacccaaccttgaaatcgcctgcttatttggcgatatgccccttgctgatcaacaa
gaagccatatcaccagcgcaatctggttcaacaaaagtagttctagctaccaatattgct
gaaaccagtttaactattgatggcgtaaatttggtaatcgactccggcctcgaaaagcag
gcgatctttgatcaaaacacccaaactaaccgactcagcctgactaaaattagtcaagca
tcagctattcagcgtgcaggccgtgcagggcgtttaatggccggtaaatgtttacggtta
tacggacaaagtgattttgaacgtatggcaaagcactcgccattagcgatgttacaagct
gatatcgtccctattgcccttgaggctagcaggtggggcgtagcagcactcaagcaatta
ccactattaaccttgcctaaagcttttgttgaacagcaagcatggcaaacacttgcacaa
ctaggtttgactgatactcatcacaaattgaccaaacatggcgatgcctgtgcaaagctt
tcgtgccatccgcgctttgctcatatgatagagcgggcttatcaggcagagatagcggga
gaaactggctttaccttattagcctgtattgtcgccgcgatgttagagcaaaaagatatt
ttttcagcatcaatagggcgcaacaacgcaagtttgcatcaacggatagattacttgata
aaccaaggagaaaagcgctttggctttatttttaaacagataaagcagctatttgctcgt
tatcaaggtgaatgtcaaagcacatatcagcaattgcctatatcgttaacaggtgttttg
gttgcgtgggcttttcccgagcgcattgcgaaagcgcgcaatcagcaaggcagttatgtc
tcattatttaataaaggctatcagcttgatcatgaagataccttgtgtgagcatgcgttt
ttggctgtcgcgcaacttagccaagtagagcaaaagctaactattcgtatcgcgtgccca
atctcactcgagcaaataaaacagtggcagctggccaagcagtatacggagttagtgtgc
gcttatgatgccaagctagataaaattaccgccaatgaatgccagttattagaacaatta
gtgatcagccgagccgcgcaaagccaagcgttaacccaagagagtgttgctcaactatgg
cggcagcaaatagcgcagcaagggttagcatggcttgcttggtctgaagcagcagagcag
gttaaattgcgttggcaatggctcaatcgttttcaaccacaacttggcttacccgagcta
accgaaccctatttactagcagagctcgatacctggctattaccttatgcgagtgagtgc
caaagcaaaaaagcacttgatcggctcaagcttgaagaattactgcttcacttgcttgac
tatcagcaacagcagttactggagaagttggcgccaacttactatgtcggcccaacgggg
cgaaagtgtcggatcacttatgacttaatcaatccacctaaagtgtcattgccgatgcag
gaaatctatggccttgctcaatcgccacaaattggtgatattgatcgtggtaaaggtgtg
ggtttagtacttgaactcatgtcgccggctaatcgaccgattcaaataacgagtgatctc
agccagttttggcaaggcagttataaagcggtgcaaaaggatatgaaggccagctaccct
aagcactattggccagatgatcccgcaaacgcagtgccaaccaacaaaactaaacgcttt
atcaaaaactag
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