Thalassotalea sp. LPB0316: LP316_05370
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Entry
LP316_05370 CDS
T08426
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
thab
Thalassotalea sp. LPB0316
Pathway
thab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LP316_05370 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thab03019
]
LP316_05370 (rnr)
03016 Transfer RNA biogenesis [BR:
thab03016
]
LP316_05370 (rnr)
Enzymes [BR:
thab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LP316_05370 (rnr)
Messenger RNA biogenesis [BR:
thab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LP316_05370 (rnr)
Transfer RNA biogenesis [BR:
thab03016
]
Prokaryotic type
tRNA degradation factors
LP316_05370 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QOL26730
LinkDB
All DBs
Position
1209943..1212354
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AA seq
803 aa
AA seq
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MTIQDPHFDREAKKYEKPIASRELILELISQATTPLTFKGVCQATGIFEESDKVALKRRL
RAMEQAGQLVFNKFKQYVIPAKRDVITGRVIGHRDGYGFFTPDTGGKDFFISSHEMQRVF
HGDVAEGMLLERTDKKGRKEIRILNVIEPRKHGIVGRLFKEHNITFVVPDDARIQQDILI
PPEQTMGAKHGQMVVIEIIQRPSKHRNAMAKVIEVLGDHMAPGMEIEIALREHDLPHEFS
AQVKAEVATLSDEVTEEAKVPRVDLRDLPLVTIDGEDARDFDDAVYCQPKKSGGWRLWVA
IADVSYYVRPNTALDDEAIARGNSVYFPSQVIPMLPEKLSNGLCSLNPDVDRLCMVCEMT
VSASGNLSGSKFYPAVMRSKARFTYTKVAAILDGDQALIDQYAPLVDDLRHLHDMYIALA
SARDNRGAIAFETEESQFIFNQDRKIESIVPLIRNDAHKMIEECMILANVATAKFIEKHK
MPGLFRVHDKPSDDKYRNFISYLGELGIEIPYKEAPEPSDYGYILAKVAERPDQELIQTM
LLRSMKQAVYQSENIGHFGLALTQYSHFTSPIRRYPDLVVHRVIKAILQQQAESEANVGY
FSYTDQQVTELGEHCSMTERRADDATRDVADWLKCEYMLDHVGDSFTGVISTVTNFGLFV
RLQDLHIEGLIHITSLGRDFYHFDDVRMCLSGENTGKRYNVGDVLAVQVAAVNLDEKKID
LVLQGENAILQKAKPIARSNAKQGKGKKVKSKAQERAKSAARDFEKPAKGKKKDKAEKSK
VKKRKARKNRPGKNARKAAKSKK
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
gtgactatacaagatcctcacttcgaccgagaagctaaaaaatacgaaaaacctatcgcg
agccgcgagcttattctcgagctgatcagccaagcaacaacaccgttaacctttaaaggt
gtttgtcaggcaaccggcatttttgaagaaagcgataaggtggcattaaaaagacgctta
cgagctatggagcaagctggtcagctcgtgttcaataaattcaaacagtatgttatccca
gccaaacgcgatgtcatcacagggcgtgtgattggtcaccgcgatggttatggctttttc
acgccagataccggtggtaaagatttctttatctcatctcacgaaatgcaacgggttttt
cacggcgatgttgccgaaggtatgctgcttgagcgcaccgataaaaaaggccgtaaagaa
attcgcattctcaatgttattgaaccgcgtaaacacgggattgttggtcgcctttttaaa
gagcacaatattacgtttgttgtgccagacgacgcccgcattcaacaagatattttaatt
ccgccagagcaaaccatgggtgccaaacacggccaaatggtggtgattgaaattatccaa
cgaccgtcaaaacaccgcaatgccatggcaaaagtgattgaagtgctaggcgatcatatg
gcgcctggcatggagattgaaattgccttacgcgaacacgatttaccccatgaattttca
gctcaagtcaaagcggaagtcgctaccttaagtgatgaagtcacggaagaggcgaaagta
cctcgggttgatttgcgcgatttaccgctagtaacgattgacggcgaagatgcgcgtgat
tttgacgatgcggtttattgtcagccaaagaaaagcggcggctggcgcttgtgggtcgcg
atagcggatgttagttactacgttagacctaatactgcgttagatgatgaagcgattgcc
cgtggtaattctgtctattttccatcacaagtgattccgatgttgccggaaaaactgtca
aacggcctgtgttcgttaaatcctgatgtcgatcgcctgtgtatggtctgtgaaatgacc
gttagtgcctctggtaatttatctggcagtaaattttatccggcggtaatgcgctctaaa
gcgcgttttacctacactaaagtggcagcaatcttagacggtgatcaagcgttgatcgac
caatacgccccattggttgatgatttacgtcacttgcacgatatgtatattgcattggcg
agcgcaagagataaccgcggtgcaattgcttttgaaacggaagagtcacaatttatcttt
aaccaagatagaaaaattgaatcgattgtcccgttgatccgtaacgatgcgcacaagatg
attgaagaatgcatgatcttggctaatgtcgcgacggcgaagtttatcgaaaaacacaaa
atgccggggttatttcgtgtccacgataaaccgagtgacgataaataccgcaattttatc
tcgtacttaggtgaattaggtattgagatcccgtacaaagaagcgccagagccttctgat
tatggctatattttggcaaaagttgctgaacgcccagatcaagaactgatccaaactatg
ttactgcgttcgatgaagcaagcggtttatcaaagtgaaaacatcggtcactttggcttg
gccttaacgcaatatagccactttacttcgccaattagacgttatcccgatcttgtggtt
catcgcgtgattaaggctattttacagcaacaggctgaaagtgaagctaatgttggttat
ttcagttataccgaccaacaagtaacagaactaggtgagcactgttcgatgaccgagcgc
agagccgatgatgccacgcgcgacgtcgctgattggctcaagtgcgaatacatgcttgat
cacgttggcgacagctttactggggtgatttcgacagtaaccaattttggcctttttgtt
cgcttacaagacttacatattgaagggcttattcacattacttcactgggtcgcgatttt
tatcactttgacgatgttagaatgtgcttatccggtgagaatacaggtaagcgctacaat
gttggcgatgtgttagctgtgcaagtagcggcagtcaatcttgacgagaagaaaattgat
ctggtattacagggtgaaaatgccattttacaaaaagcaaagccaatagcgagaagtaac
gctaaacaaggcaagggtaagaaagtcaaatcaaaagcgcaagagcgagctaaaagcgcg
gcacgtgatttcgaaaagccagcaaaaggtaaaaagaaagacaaagctgaaaagtcgaaa
gttaaaaagcgcaaagcgcgtaaaaacaggccaggcaaaaatgcccgtaaagccgcgaaa
tcaaagaagtaa
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