Thalassotalea sp. LPB0316: LP316_08820
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Entry
LP316_08820 CDS
T08426
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
thab
Thalassotalea sp. LPB0316
Pathway
thab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LP316_08820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thab03019
]
LP316_08820
03009 Ribosome biogenesis [BR:
thab03009
]
LP316_08820
Enzymes [BR:
thab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LP316_08820
Messenger RNA biogenesis [BR:
thab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LP316_08820
Ribosome biogenesis [BR:
thab03009
]
Prokaryotic type
rRNA helicases
LP316_08820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
TAFII55_N
Helicase_RecD
LodA_N
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QOL24468
UniProt:
A0A7L9S2C0
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All DBs
Position
1998226..1999989
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AA seq
587 aa
AA seq
DB search
MTESNNAQVSFDALGLPEVLSSALKTMGFENPTPIQAMTIPPLLAGKDVLGEAQTGTGKT
AAFGLPALASIDTSIRKPQMLVIAPTRELAIQVSEAIEQFAKNMKGLRVATVYGGQSYGP
QFAQIERGAQVIVGTPGRMMDHLRRKSLKLEHVKFCALDEADEMLNMGFLEDIEWILDHL
SDDTQMALFSATMPPQIRKIANRFLKDPEHLRVAPVKKVKANITQLVWKVSVLNKKTALE
RVSEVLDYKAMIVFVRTRNDTVEVAEHLESRGFAAAAINGDMNQAQRERTVDQLRNGALK
ILVATDVVARGLDIPSIDLVVNYDLPDDNEVYVHRIGRTGRAGREGTSISFMRPREMYRI
RHYERLTSGKVEDFELPTIQEIGKARIDRTKQELVDVLANNDISQMMEIVEKMAEESEMS
VEHLAAALLHLKQLKQPLCPKEDPKPRREARDRDDRGGRRDARRGDRDNRGDRGERAPRK
PKAVRSDVDWQTYRLEVGKEHGAKPGDIVGAIANEISLDSSYIGQINLFERHSFVQLPKN
MPSNIYKKLKGVRVRRQQLDISLSEAPVVTQKRKPRGERSERPRRYN
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgactgaatcaaacaatgctcaagtgagctttgacgctttaggcttgcctgaagtttta
tcatctgctttaaaaacaatgggtttcgagaacccaacaccgattcaagcgatgactatt
ccaccgttattagcaggcaaagacgtattaggtgaagcacaaacgggtaccggtaaaact
gccgcgtttggcttgccggcattagcgagtatcgatacctcgattcgcaagccgcaaatg
ctagtgattgcacctacacgtgaattagcgattcaagtatctgaagcgattgaacagttt
gctaaaaatatgaaaggcttgcgcgtggcaacggtatacggtggtcaatcttatggcccg
cagtttgcgcaaattgagcgtggtgcccaagtgatcgttggtacgcctggccgtatgatg
gatcacttacgtcgtaaaagcttgaaactagagcacgttaaattttgtgcgttagacgaa
gctgatgaaatgctcaacatgggctttttagaagatattgagtggatcttagatcactta
agcgacgatacacaaatggcattgttctcagcgacaatgccaccgcaaattcgcaaaatt
gctaaccgattcttaaaagatcctgagcacttacgcgtagcgcctgttaagaaagttaag
gcaaatattacacagttagtgtggaaagtcagtgtacttaacaagaaaacggcactagag
cgtgtctctgaagtactagattacaaagcgatgatcgtgtttgttcgtacccgcaacgac
accgttgaagtggcagagcaccttgagtcgagaggatttgctgccgcggcgattaatggt
gatatgaaccaagcgcagcgtgaacgcaccgttgatcaattgcgcaatggcgcattaaaa
atcttggtagcaacagacgtcgttgcccgtggtttagatattccaagtatcgatctagtc
gtcaactacgatttacctgacgacaacgaagtttacgttcaccgcattggtcgtactggc
cgtgctggccgtgaaggtacgtcgatttcatttatgcgtccacgcgaaatgtaccgcatt
cgtcattacgagcgtttaacatcgggtaaagttgaagattttgaattaccaacaattcaa
gaaattggtaaagcgcgtattgaccgcactaagcaagaattagtggatgtattagccaat
aacgatattagccaaatgatggaaatcgttgagaaaatggctgaagagtcggagatgtcg
gttgagcacttagctgcagcgttattgcaccttaagcagttaaaacagccattatgtccg
aaagaagatcctaaaccgcgccgtgaagcgcgtgatagagatgacagaggcggtcgtcgt
gacgcccgtcgtggtgatagagacaatcgtggtgaccgtggtgaacgcgctccgcgcaaa
ccaaaagctgtgcgcagtgatgttgattggcaaacataccgtttagaagtgggtaaagag
cacggtgctaagcctggtgatattgttggcgcaattgctaacgaaatctcattagacagt
agctacatcggtcaaatcaacttgtttgaacgtcatagctttgttcagttgccgaagaat
atgccttcaaatatctacaagaagttaaaaggtgttcgcgtacgtcgccaacagttagat
atttcattatctgaagcgccagtggttacgcaaaaacgcaaacctcgtggtgagcgcagc
gagagaccacgccgttacaactaa
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