Thalassotalea sp. LPB0316: LP316_09645
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Entry
LP316_09645 CDS
T08426
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
thab
Thalassotalea sp. LPB0316
Pathway
thab03030
DNA replication
thab03430
Mismatch repair
thab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LP316_09645 (dnaE)
03430 Mismatch repair
LP316_09645 (dnaE)
03440 Homologous recombination
LP316_09645 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thab03032
]
LP316_09645 (dnaE)
03400 DNA repair and recombination proteins [BR:
thab03400
]
LP316_09645 (dnaE)
Enzymes [BR:
thab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LP316_09645 (dnaE)
DNA replication proteins [BR:
thab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LP316_09645 (dnaE)
DNA repair and recombination proteins [BR:
thab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LP316_09645 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
MIMI_R596-like_C
Motif
Other DBs
NCBI-ProteinID:
QOL24608
LinkDB
All DBs
Position
2174425..2177961
Genome browser
AA seq
1178 aa
AA seq
DB search
MSEHIEVENVPLPAPKFVHLRVHSDFSMRDGLNKVKPIVAKAEELNMPALALTDQMNLCG
LVKFYHATHGAGIKPIIGADFYVKSDLLEDELSRLVIIASNNTGYKNLTELISKGYLRGH
IQNRAVIDRDWLIEHAEGLILLSGAKEGDIGKALLKNNINQAQQMLSFYQQYFPNNYYLE
LIRTGRDDEETYLHLAVDFASAHDIPVVATNEVMFLTPDLFDAHEIRVAIHDGFTLDDKR
RPKKYSPQQYLRSEEEMVELFSDIPEALENTVEIAKRCNATVRLGEYFLPDFPTEGMKIE
DYLVKVSKEGLEERLEFLFDKDSPDFPEIRKEYDERLKVELDVINNMGFPGYFLIVMEFI
QWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM
DRRDEVIDHTAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG
MTLAKAFEAEPRLPEIYEQDSDVKDLIDMCRILEGTTRNAGKHAGGVVISPTTITDFAPL
YCDDEGKNPVTQFDKNDVEDAGLVKFDFLGLRTLTILQWAIEMADTQLLKEGKEPIDITA
IPLDDKKSFKVLLASQTTAVFQLESSGMKSLIDKLQPDCFEDIIALVALFRPGPLQSGMV
DNFIERKHGREEISYPDETWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADML
RRAMGKKKPEEMAKQRSTFEQGAIDNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVS
YQTLWMKAHFPAPFMAAVMSADMDNTDKIVTLVDECKNMGLTLLPPDVNSGLYKFTVNDN
NEIVYGIGAIKGVGEGPIDAIIAAREAGGPFADLFDFCARVDIKKTNKRVLERLVKAGAM
DALGPKTDNGGPHRAALFESLTEAIKAADQHAKAQAIGQHDLFGLINEEPDDTRQAFKQV
TPWPEEVWLDGERETLGLYLTGHPIDRYLKESKRYATSRLVGMQPTGRDGSATAVGLVIG
VRVLVNKRGRRWALVTLDDKSARIDVRLFPDDFDKFQDILVKDAILVCSGQVSFDDYSGG
ITMSGRDIMTITDARENYLQSIDLSLDRQVVNDNFFEQFSQVLSEYKDGTCPVKVNYLRD
EAQATLELGVQWRVTPADKLLHQLKLLLGEDNVALQFK
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagcatatcgaagtagaaaacgtaccattacccgcgccaaaattcgtgcacttg
cgggtgcacagtgacttttcaatgcgcgatggcttaaacaaagttaagccgatcgttgct
aaagccgaagaactcaatatgccggcattggcattgaccgaccaaatgaatttatgcggc
ttggtaaaattttatcacgctacgcacggagcgggtatcaagccgattatcggcgcagac
ttttacgtaaaaagcgatttgcttgaagatgaattatcgcgtttagttattatcgccagt
aacaacacgggttataaaaatctaacagagcttatttcaaaaggttatctgcgtggccat
attcaaaacagagcggtcattgatcgcgactggctcattgagcacgccgaaggcttgatt
ctattatcgggtgccaaagaaggcgatattggcaaagcactgttaaaaaataatattaat
caagcccagcagatgctgagcttttatcagcagtatttcccaaataattattacctcgaa
ttgattcgaacagggcgtgacgacgaagaaacttacctgcatttagctgtcgattttgct
agtgcgcacgacatcccagtggttgccacgaatgaggtaatgttcttaacgcctgattta
ttcgacgcccatgaaattagggtcgcgattcacgatggttttactttagacgataaacgt
cgaccgaaaaagtattcacctcagcagtatcttcgttcagaagaagaaatggttgagcta
tttagcgatatccctgaagcacttgaaaacaccgttgaaatcgctaagcgctgtaacgcg
acagtgcggctaggtgagtacttcttacccgattttccgaccgaaggaatgaagattgag
gattatctcgtcaaggtttcaaaagagggcctagaagagcgtcttgagtttttatttgat
aaagactcacctgatttccccgaaatacgcaaagaatacgatgagcgcctcaaggtcgag
ctcgatgttatcaataacatgggattccctggttacttcctgatcgtgatggaatttatc
caatggagtaaggataacaatattcccgtgggtcctggtcgtggttcaggagcgggctcg
ttagtcgcctatgcgctaaaaattaccgatcttgatccgctagaatttgacttactattc
gaacggtttttgaaccctgaacgtgtatcaatgccggactttgacgtcgacttctgtatg
gatagacgcgatgaggtaatcgatcatactgccgaactctatggccgtgatgcggtatca
caaattattacctttggtaccatggcggcgaaagcggtaattcgcgatgttggccgtgta
ttgggtcatccttatggttttgtcgatcgcatttcgaagttgattccccctgatccgggc
atgacattagccaaagcatttgaagcggagccgcgtttacctgaaatttacgagcaagat
tcggatgtaaaagatctcatcgatatgtgtcgcatcctcgaaggtacaacgcgtaacgcg
ggcaagcacgctggtggtgttgtaatctcgccaaccactattaccgattttgcgccactt
tattgtgacgacgaaggtaaaaaccctgttacccagtttgacaaaaacgatgttgaagac
gccgggttagttaaattcgacttcttagggttacggaccttaaccatcttacagtgggcg
attgagatggctgatacgcagctactcaaagaaggcaaagagccgattgatataaccgca
atcccacttgatgataaaaaatcgtttaaagtgttacttgcctcgcaaaccactgctgtt
ttccagcttgaatcgagtggcatgaaatcactcattgataagcttcaacccgactgtttt
gaagatattatcgctttggtagccttattccgcccagggcctttgcaatcgggcatggta
gataactttatcgagcgtaagcacggtcgtgaggaaatatcctacccagatgaaacttgg
caacacgaatcattaaagccgattcttgaacccacttacgggattattctttaccaagag
caggtaatgcaaattgctcaggtactagcgggttacacgttaggtggtgccgacatgcta
cgccgagccatgggtaagaaaaaacctgaagaaatggcgaaacagcgttcaaccttcgag
caaggtgcaatagataacggtgttgatggcgagttggcgatgaaaatcttcgacttggta
gaaaagttcgccggttatggttttaacaaatctcactcagcagcctacgcgttagtttcg
tatcaaacactgtggatgaaagcgcactttccggcgccgtttatggcagcggtaatgtct
gctgatatggataataccgacaagatcgttaccctagttgatgaatgtaaaaacatgggc
ttaaccttattgccaccagatgttaactcaggtttatataagtttaccgttaacgataac
aacgaaattgtctacggcattggcgcgattaaaggggtcggtgaagggccaattgatgcg
ataattgctgctcgtgaagccggtggaccatttgccgatttattcgatttttgtgcgcgg
gttgatattaagaaaaccaataagcgcgtgttagaacgtttagtaaaagccggtgcgatg
gatgcactcggtccaaaaaccgataacggtgggccacatcgcgcagccctgtttgaaagc
ttaacagaagcgattaaagcggcagatcaacacgccaaagcacaagccattggtcagcac
gatttgttcgggctgatcaacgaagagcctgatgatacccgccaagcctttaaacaagta
accccttggccagaagaagtgtggcttgatggtgaacgcgaaacccttggcttatactta
accggccacccgattgatcgctatttaaaagaaagtaagcgatacgccacatcacgatta
gttggcatgcaaccaacagggcgagatggcagtgcaaccgcggtcggcctagtgattggc
gtacgtgttttggttaataaacgcggccgtcgctgggcgttagtgacgcttgatgataaa
agtgcccgaatcgatgtgcgactgttccccgacgactttgataagtttcaagatatccta
gtgaaagacgctattttagtctgtagcggacaggtcagctttgatgattactccggtggt
attacaatgtcgggtcgcgatataatgacgattaccgatgcgcgggaaaactatctgcaa
agcattgatttatcattagatcgccaagttgttaatgacaacttttttgaacaatttagt
caggtgttgtctgagtacaaagacggcacctgcccagtaaaagtgaattatttgcgtgat
gaagcgcaggcaacactcgaattgggcgttcagtggcgggtaacccctgctgacaagtta
ttacatcagttgaagttattgttaggtgaagataacgtcgccttacaatttaaataa
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