Thalassotalea sp. LPB0316: LP316_10115
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Entry
LP316_10115 CDS
T08426
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thab
Thalassotalea sp. LPB0316
Pathway
thab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LP316_10115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thab03019
]
LP316_10115
Enzymes [BR:
thab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LP316_10115
Messenger RNA biogenesis [BR:
thab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LP316_10115
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QOL24694
LinkDB
All DBs
Position
2281584..2282873
Genome browser
AA seq
429 aa
AA seq
DB search
MSVDAIGLSADLLKAVKSCGYKNLTPIQQKSIPLIRKGGDLLASAQTGTGKTAAFSLPLI
DLIAPKKASGNHHVKVLILTPTRELAQQVHDNITAYTQFMEVTAGVVYGGGAMPSQSKML
KQGVDILIATPGRLLEHTALNNVSLAGVEHVVLDEADRMLDMGFLSDINRIFDLIKHKHQ
TLMYSATFSNKVKTLANQILQTPKTIEVAKQNSTSGKVKQAVYIVAESRKRELLSEIIGV
NNWQQVLVFAGTKESANILAKELKLDGIKAAICHGDKSQGARNKALDDFAEGKVRVLVAT
DVAARGLDIPDLPYVVNFHLPFLAEDYVHRIGRTGRAGKTGTAISLVSPKDEKFLANIEA
FIKRKFDRIVLPGYEMTASQEAENSTKTYEKPSQNRYKTTQAKNRKIAQKNKQKNSGNRS
VTKGRNKRR
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgatgctattggcttatcggctgatttattgaaagctgttaaaagttgcggt
tataaaaatctgacaccgattcagcaaaaatctattcctttgattcgcaaaggcggtgat
ttacttgctagcgcacaaacgggaaccggtaaaacagcggctttttctctacctcttatt
gatttaattgcacctaaaaaagctagcggtaatcatcatgttaaggtgcttattttgacg
cctacccgagagttagcgcagcaagtacacgacaacattaccgcctatactcagtttatg
gaagtaacggcaggcgtggtttacggcggtggcgctatgccgagccaaagcaagatgcta
aagcagggcgttgatattttaattgctacaccggggcgattattagaacacactgcgctt
aataacgtgagccttgcgggtgttgaacacgttgtgttagatgaagccgatcgcatgtta
gatatgggctttttgagtgatattaatcggatattcgatttgataaagcacaagcatcaa
accttgatgtattcagcgacattttcaaacaaagtaaaaaccttagccaatcaaatttta
caaacgccaaaaaccattgaagttgcgaaacaaaactcaacttcaggtaaagttaaacaa
gcggtttatatagtcgccgagtcacgtaaacgcgagttactgtctgaaattattggtgtc
aacaattggcagcaagtgttggtttttgctggtaccaaagaaagtgccaacattttagct
aaggagctaaagctcgacggtatcaaagcggcgatttgtcacggtgataaatcacaaggt
gcgcgcaacaaggcgcttgatgattttgctgagggtaaagtaagggtattagtagcaacc
gatgttgctgctcgtggcttagatattcccgatttaccgtatgtggtcaactttcattta
ccgtttttagctgaagactatgtacatcggattggccgaacggggcgcgcaggtaaaacg
ggtacggctatttcactagtttcacctaaagatgaaaagtttttagcgaatattgaagcg
tttatcaaacgtaagtttgaccgtattgtgttaccaggctacgaaatgacggcatcacaa
gaagcggaaaactcgacaaaaacctacgaaaagccctcgcaaaaccgatataaaaccaca
caggcgaaaaaccgtaaaatagcccaaaagaacaagcaaaagaactcgggtaatcgctcg
gtaacgaaagggcgcaataaacgacgctaa
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