Thalassotalea sp. LPB0316: LP316_14090
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Entry
LP316_14090 CDS
T08426
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thab
Thalassotalea sp. LPB0316
Pathway
thab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LP316_14090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thab03019
]
LP316_14090
Enzymes [BR:
thab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LP316_14090
Messenger RNA biogenesis [BR:
thab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LP316_14090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_30
DEDD_Tnp_IS110
AAA_22
ERCC3_RAD25_C
RraA-like
Motif
Other DBs
NCBI-ProteinID:
QOL25409
UniProt:
A0A7L9S643
LinkDB
All DBs
Position
complement(3124492..3125913)
Genome browser
AA seq
473 aa
AA seq
DB search
MTFSSLELSPEILQAIEEKGYKTPSPIQAQAIPKILLGKDVMAAAQTGTGKTASFVLPIL
QQLQQSKQRVKHNHTKVLVLTPTRELAAQVGENVETYAKHLKVSSTVVYGGVKINPQMMR
LRNGVDILVATPGRLLDLFEQNAIKFDELTTLVLDEADRMLDMGFIRDIRNIIKLLPTKR
QTLLFSATFSPEIKELAKGVVVKPTEISVTPDNATASTIEHWLVPTDKKKKPALLAHLIK
QEKWQQVLVFSRTKHGANRLVRFLESQEIEALAIHGNKSQGARNRALQAFKDKTIQALVA
TDIASRGIDISQLPIVVNVDLPNVQEDYVHRIGRTGRAGVDGQAISLVSADEIDQLQDIE
YVIQQHIERREIDGFIPHNPLPESRAIKPYKKKKPKKPKKPKVSDSAKSQNSDKQNAVKS
LPKKQKPNKPQHNKSRSTDNQSQPKANKKPAGSANKNRKHWRKKPNKASSSNS
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgacattttcttcactcgaactctctcctgaaattttacaagcgattgaagaaaagggt
tataaaacgccatcgcctattcaagcacaagcaattccgaaaattttattgggtaaagac
gttatggcggcggcgcaaacaggcaccggtaaaaccgccagttttgttttgccaattctt
cagcaattacagcaaagtaagcagcgcgtaaagcacaatcacactaaggttttggtatta
acgccaacgcgtgagcttgccgcgcaagttggtgaaaatgttgaaacttatgccaaacac
ctaaaggtatcaagcactgtggtttatggcggtgtgaaaattaaccctcaaatgatgcgc
ttgcgcaatggggttgatattttagtggcaacaccgggccgtttactcgatttatttgaa
caaaacgcgattaagtttgatgaattaacaacactggtattagatgaagccgatcgcatg
ttagatatgggctttattcgcgatattcgtaatatcattaaactcctgccaacaaaacgc
caaaccttattgttttcggcaaccttttcgccagagatcaaagagttggccaaaggtgtt
gtggtaaagccaactgaaatttcagttacacctgacaatgcgacagcatctacgattgag
cactggttagtaccaactgataaaaagaaaaaaccggcactacttgcccatttgatcaag
caggaaaagtggcaacaggtgttagtttttagccgcactaaacacggcgccaatcgcttg
gttcgctttttagaaagccaagaaattgaagcgctcgccattcacggtaataaaagccaa
ggtgcgagaaatagagcgttacaggcatttaaagataaaacgattcaggctttagtggcc
acggacattgcttctcgtggcattgatattagccaattgccaattgttgtaaatgttgat
ttacctaacgttcaagaagactatgttcaccgaattggtcgaacgggacgcgcaggcgtt
gatggtcaagcgatttctctggtaagcgcagatgaaatagaccaacttcaagacattgaa
tacgtgatccaacaacatattgagcgcagagaaattgatggtttcatccctcataacccg
ttgcctgaatcacgtgctatcaaaccctataagaagaaaaagccgaaaaaaccaaaaaag
ccaaaagttagtgattcagcgaaatcacaaaacagcgacaagcaaaacgcagttaaatcg
ttaccgaaaaagcaaaagcccaataagccacaacacaataagagccgttcgactgacaat
caatcgcaacctaaggcgaataaaaaaccagcgggctcggctaataaaaatcgcaagcac
tggcgaaaaaagcccaataaagcttcatcttcaaattcatag
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