Thalassotalea sp. LPB0316: LP316_14935
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Entry
LP316_14935 CDS
T08426
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
thab
Thalassotalea sp. LPB0316
Brite
KEGG Orthology (KO) [BR:
thab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
thab03009
]
LP316_14935 (rlmD)
Enzymes [BR:
thab01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LP316_14935 (rlmD)
Ribosome biogenesis [BR:
thab03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LP316_14935 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
RrnaAD
PCMT
MTS
Methyltransf_11
Methyltransf_23
Methyltransf_15
DOT1
TehB
TRM5-TYW2_MTfase
Cons_hypoth95
Motif
Other DBs
NCBI-ProteinID:
QOL25569
UniProt:
A0A7L9S6I1
LinkDB
All DBs
Position
complement(3319874..3321229)
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AA seq
451 aa
AA seq
DB search
MVKIFKPTANKALKGKNLTLTIERLDFNGRGVARYQNKPIFISGALAQEQVKVRIIEQSS
KYCVGQLLDVIKPSDVRSAPKCPHYKVCGGCDMQHIDESQHVEIKQAKVTELFARQKLLD
LPWQDALVDSQWHYRRKARLGVQYHKNGNAVVGFREKHTNNVTPIKQCDVLLKPLSKLLP
ELVATVNQLPAKSIGHIELVYTERQPAQQNQPIITLVIRQLGKLTEAVKERWQVFCQQAS
NNSTFQVYFDFGQEKPLEPLNQVEGLSYLVDSDIEIAFEPSNFIQVHHQVNQQMISHAID
WLSLSEQDKVLDLYCGLGNFSLPLAKRVASVTGIEGVQAMVDKAANNASVNNLSNCQFYQ
ANLNANWQSGAWLEQSYNKILLDPARAGALEACQQLGRFNATDIVYVSCDPATLARDSAV
LVAQGYQIKKIALMEMFGQTKHVETMVLFQR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggtaaaaatttttaaaccgaccgccaataaagccctaaaaggaaaaaacttaacgcta
accatcgagcgactagactttaacggtcgtggcgttgctcgttatcaaaataaacccata
tttattagcggcgcgttggcacaagagcaagtaaaggtacgaattatcgagcaatcgagt
aagtattgtgttggccaactgctcgatgtaatcaagccaagtgatgttcgctctgcgcct
aaatgcccgcactataaagtatgtggcggctgtgatatgcagcatatcgatgaatctcaa
cacgttgagatcaaacaggcaaaagtcaccgagttatttgcgaggcagaaattgctagat
ttaccctggcaagacgctttagttgatagccagtggcactatcgtcgcaaagcacggctt
ggtgttcagtatcacaaaaatggcaatgctgtggtgggctttcgcgaaaagcacaccaat
aatgtaacacccattaaacaatgcgacgttttactaaagccgttatcaaaactacttcct
gagttagttgccacggttaatcaattgccggcgaaatcgattggtcatatcgagctagtt
tataccgagcgtcaaccagcgcaacaaaaccagccgattattacgttggttattcggcaa
ctgggtaagctaaccgaagcagttaaagagcgctggcaagtattttgtcaacaagcaagc
aataacagcacctttcaagtttattttgactttggtcaagagaaaccacttgagccgctc
aatcaggttgaaggtttgtcttatcttgtcgatagcgatattgagatagcttttgaacca
agtaacttcattcaagtgcatcatcaagttaatcaacagatgattagtcacgcaatcgat
tggttatcattgtcagaacaagacaaggttttagatctttattgtggccttggtaacttt
agtttaccgctggctaaaagagtggcaagcgttacagggattgaaggcgttcaagccatg
gtcgataaagcagctaacaacgcaagtgttaataacttgagtaattgtcagttttatcaa
gctaatttaaacgcaaattggcagtcgggtgcttggcttgaacaatcgtataataaaatt
ttattagatcctgcccgagctggcgcacttgaagcttgtcaacaacttggccgattcaat
gcgaccgacatcgtttatgtcagttgtgatccggcaaccttagctcgcgatagcgcagtt
ttggttgcacaaggctatcagatcaaaaaaattgccttaatggagatgtttggacaaaca
aaacacgttgaaactatggtattgtttcaacgttaa
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