Thalassospira marina: CSC3H3_05795
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Entry
CSC3H3_05795 CDS
T05224
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thac
Thalassospira marina
Pathway
thac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CSC3H3_05795 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thac03021
]
CSC3H3_05795 (rpoC)
03400 DNA repair and recombination proteins [BR:
thac03400
]
CSC3H3_05795 (rpoC)
Enzymes [BR:
thac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CSC3H3_05795 (rpoC)
Transcription machinery [BR:
thac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CSC3H3_05795 (rpoC)
DNA repair and recombination proteins [BR:
thac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CSC3H3_05795 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
GvpQ-like
YnfE
Motif
Other DBs
NCBI-ProteinID:
AUG52280
UniProt:
A0A2N3KB23
LinkDB
All DBs
Position
1294323..1298516
Genome browser
AA seq
1397 aa
AA seq
DB search
MNELMKIFGQPQGTQSFDQIRIQIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYRGIICEKCGVEVTLAKVRRERMGHIELAAPVAHIWFMKSL
PSRLGLLLDMMLKDLERILYFENYVVIEPGLTPLKMGELLSEDQFTTAQEEYGEDSFRAG
IGAEAIRDMLAAIDLDDEYEVAKLDLKETNSEAKRKKLVKRLKLIEAFRDSGARPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QESVDALFDNGRRGRPITGANKRPLKSMSDMLKGKQGRFRQNLLGKRVDYSGRSVITVGP
SLKLHQCGLPKKMALELFKPFVYAKLELYGMATTIKAAKRMVEKERPEVWDILEQVIREH
PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARTLMMSTNNILSPASGRPIIVPSQDIVLGLYYISMDGEGEPGEGMSFVDIAEIEQALDS
GAVGLHSKINARYHTVDANNEKITIRVQTTPGRMLLSELLPRHPRIPFSTINKLLTKKDI
SNVIDIVYRHCGQKETVIFADRLMGLGFNWACRAGISFGKDDMVIPDAKEPLVNTTHEKV
KEYEQQYQDGLITRGEKYNKVVDAWSQCTDDVSEAMMKGISATKEGNQINSVYMMAHSGA
RGSAAQMRQLAAMRGLMAKPDGSIIETPIISNFKEGLTVQEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDSIITQHDCGTERGLDIAAVVDSGEVIETLSDRILGRYTADAIVD
PSTGEEIVGKNEMVVEDHLDLIEKAGVESARIRSVLTCDAETGVCGHCYGRDLARGTTVN
IGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEVSGVEANFDATVKIKNHAVVTNSK
GVNIVMARNLEILLLDKNGRERAKFRVPYGAKLLTEDGAQISRGQKLAEWDPYTLPIITE
KEGFVNYVDLIEGTTIREIYDEATGIGAKTVIDWKSQPKASDLKPRVTLRDENGEVINLD
NGLEARYFLSVDAILSVENGQKVNAGDVLARIPREGSKTRDITGGLPRVAELFEARKPKE
HAIIADIAGRVEFGKDYKNKRRVILHPHDDAGVEPIEYLIPKGKHLAVQEGDFVERGDLL
MDGSPVPHDILRVMGVPALADYLVNEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITKPG
DTTLLVGEIVDRVDFEAENEKAAREGGDMAEASPVLQGITKASLQTHSFISAASFQETTR
VLTEAAVSGKTDTLIGLKENVIVGRLIPAGTGAVMNRFRALASERDRVVQLEAEEEEIGD
NFGPQGGSESPSLPAGE
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagttgatgaagatcttcgggcagcctcagggcacccaaagcttcgatcagatc
cgcattcagatcgccagcccggagcgtatccgttcctggtcttttggtgaaatcaagaag
ccggagaccatcaactaccggactttcaaaccggagcgcgacggtctgttctgtgcgcgc
atttttggtccggttaaggattacgaatgcttgtgcggcaagtacaagcgcatgaaatat
cgcggtattatctgcgaaaaatgcggcgtcgaagtcacgctggccaaagtgcgtcgcgaa
cgcatgggacatattgaactggcagcacctgttgcgcatatctggttcatgaaatccctg
ccgagccgccttggtctgttgctcgacatgatgctcaaggatcttgagcgtattctctat
ttcgaaaactatgtcgttattgagccgggtctgaccccgctcaagatgggtgaacttctg
agcgaagaccagttcaccacggcacaggaagaatatggcgaagacagcttccgtgccggt
atcggtgcagaagccatccgcgacatgcttgctgcgatcgaccttgatgacgaatacgaa
gtcgccaagctcgacctcaaggaaaccaactcggaagccaagcgcaagaagctggtcaag
cgtctgaagctgatcgaagctttccgtgattcgggtgcccgtcctgaatggatgattctg
gaagtcattccggtcattccgccagaactgcgtccgctggttccgcttgatggtggtcgt
ttcgcaacgtcggatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgtctg
aaacgcctgatcgaactgcgtgcgcccgatatcatcgtgcgtaacgaaaagcgtatgctg
caggaatcggtcgacgcactgtttgacaatggccgtcgcggccgtccgatcacgggtgcc
aacaagcgcccgctgaaatcgatgtccgacatgctcaagggcaaacagggtcgtttccgt
cagaaccttctcggtaagcgcgtcgactattccggtcgttccgttattaccgtgggtccg
agcctgaagctgcaccagtgcggcctgccgaagaaaatggcgctcgaactgttcaagccg
ttcgtttatgcgaagcttgaattgtacggtatggcgaccacgatcaaggctgccaaacgc
atggtcgaaaaagagcgtccggaagtctgggatatcctcgagcaggttatccgcgaacac
ccggtcatgctcaaccgtgcgccgacgctgcaccgtcttggtatccaggcattcgagccg
accctgatcgaaggtaaggcaatccagcttcatccgctcgtctgtacagcttttaacgct
gacttcgacggcgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctcgaa
gcccgtacgctgatgatgtcgaccaacaacatcctgtcgccggcatcgggtcgtccgatt
atcgtgccgtcccaggacatcgtgcttggtctgtactacatctcgatggatggtgaaggt
gaacccggcgaaggcatgtcctttgtcgatatcgccgaaatcgaacaggcgcttgattcc
ggtgcagttggtctgcattcgaaaatcaatgcccgttaccatactgtcgatgcgaacaac
gaaaagatcactattcgtgttcagacgaccccgggccgtatgttgctctcggaactgttg
ccgcgtcatccgcgcattccgttctcgacgatcaacaagctgctgaccaaaaaagacatc
tcgaacgttatcgacattgtctatcgtcactgcggccagaaagagacggtcatttttgct
gaccgcctgatgggtcttggctttaactgggcgtgccgtgcgggcatttcctttggtaag
gatgacatggtcattcctgatgccaaggaaccgctggtcaacacgacccacgaaaaggtc
aaggaatacgaacagcagtatcaggacggcctgatcacccgtggtgaaaaatacaacaag
gtggtcgacgcctggtcgcaatgtactgacgacgtttccgaagccatgatgaagggcatt
tcggcaacgaaggaaggcaaccagatcaactccgtttacatgatggcgcactccggtgcc
cgtggttctgccgcccagatgcgtcagcttgccgccatgcgcggtctgatggcaaagccg
gatggctcgatcattgaaacgccgatcatttccaactttaaggaaggcctgaccgtgcag
gagtacttcaactccacccacggtgcccgtaaggggctggccgatacggcgctgaaaacg
gcaaactccggttacctgacccgtcgtctcgttgacgtcgcccaggattcgatcatcacc
cagcatgattgcggcaccgaacggggcctcgatattgcggctgttgttgactcgggtgaa
gttatcgaaaccctgtcggatcgtatccttggtcgttacaccgctgatgccatcgttgat
ccgtcaaccggcgaggaaatcgttggcaagaacgaaatggttgtcgaagaccatctcgat
ctgatcgaaaaagccggtgttgaatccgcgcgtattcgctcggtgctgacctgtgatgcc
gaaaccggcgtttgcggccattgctatggtcgtgaccttgctcgcgggacgactgtcaat
atcggtgaagctgttggtgttatcgccgcacagtcaatcggtgaaccgggtacccagctg
accatgcgtacgttccacattggtggtgccgcgcagcgtggtgcggaagtttccggtgtc
gaagccaacttcgatgcgaccgtcaagatcaagaaccatgctgtggtgacgaactccaag
ggcgtcaacatcgtcatggcccgtaacctggaaattctgcttctcgacaaaaatggtcgt
gaacgcgcgaaattccgtgttccttacggtgcgaagctgctgaccgaagacggtgcacag
atttcccgtggccagaaactggccgagtgggatccgtacaccctgccgatcatcaccgag
aaagaaggtttcgtgaactatgtcgacctgatcgaagggacgaccattcgcgaaatctac
gacgaagcaactggtatcggtgccaaaacggttatcgattggaagagccagccgaaagca
tccgatcttaagccgcgcgtcaccctgcgtgacgaaaatggcgaggtcatcaacctggat
aacggccttgaagcccgttacttcctgtcggttgacgcgatcctctccgttgaaaacggt
cagaaggtcaatgccggtgacgttcttgcgcgtatcccgcgtgaaggttcgaaaacccgt
gacatcactggtggtctgccgcgcgtcgccgagctgtttgaagcccgtaaaccgaaagaa
cacgcgatcatcgccgatatcgctggtcgcgttgaattcggtaaggactacaagaacaag
cgtcgtgtcatcctgcatccgcatgatgatgccggtgtcgagccgatcgaatatctgatc
ccgaaaggcaagcatcttgccgttcaggaaggggacttcgtcgagcgtggcgacctcctg
atggatggttcaccggttccgcacgatatcttgcgcgttatgggcgttccggcactggcc
gactacctggttaatgaaatccaggaagtttaccggttgcagggcgtgaagattaacgac
aagcacatcgaagtcatcgttcgtcagatgctccagaaagtggaaatcaccaaaccgggt
gacaccacgcttctggttggcgaaattgtcgaccgcgtcgacttcgaagccgagaacgaa
aaagctgcccgtgaaggcggcgatatggcagaagcctcaccggtcctccaggggatcacg
aaggcttctctccagacgcattccttcatctcggccgcgtcgttccaggaaaccacgcgc
gttctgaccgaagctgccgtatcgggtaaaaccgatacgctgatcggtctgaaagaaaac
gtgatcgtgggtcgtctgatcccggcaggtaccggtgcggtaatgaatcgcttccgcgct
cttgccagcgaacgcgaccgtgtggtccagctcgaagctgaagaggaagaaatcggggat
aacttcggtccgcagggcggttccgagtccccaagcctcccggctggcgagtaa
DBGET
integrated database retrieval system
