Thalassospira marina: CSC3H3_08580
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Entry
CSC3H3_08580 CDS
T05224
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
thac
Thalassospira marina
Brite
KEGG Orthology (KO) [BR:
thac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thac03032
]
CSC3H3_08580
03400 DNA repair and recombination proteins [BR:
thac03400
]
CSC3H3_08580
Enzymes [BR:
thac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CSC3H3_08580
DNA replication proteins [BR:
thac03032
]
Prokaryotic type
DNA Topoisomerases
CSC3H3_08580
DNA repair and recombination proteins [BR:
thac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CSC3H3_08580
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Motif
Other DBs
NCBI-ProteinID:
AUG52757
UniProt:
A0ABN5FD82
LinkDB
All DBs
Position
complement(1887945..1890620)
Genome browser
AA seq
891 aa
AA seq
DB search
MNLVIVESPAKAKTINKYLGDDYKVLASFGHIRDLPSKDGSVDTDNNFAMIWETDSRSEK
QIRDIAAAARDSDTIYLATDPDREGEAISWHILDVLEQKKLLRGRDVHRVVFHEITKRAV
TEAIANPRTLNQELVDAYLARRALDYLVGFNLSPVLWRKLPGSRSAGRVQSVALRLICER
EIEIEAFRPEEYWTLEANFGVPEGKFSARLTHLDGKKLDKLAIGSEGDAKIAKEKVESRS
YTVSKVERKDVKRRPQPPFTTSTLQQEASRKLGFGTKRTMQLAQRLYEGVDIGGETVGLI
TYMRTDAVVLSSEALAGARRLIDKDYGKDYLPDAPRSFANKAKNAQEAHEAIRPTDVFRR
PEQVARHLDKDQLALYTLIWKRTVACQMEDARFDQVAVDLASNDNHVVLRANGSVVKFDG
FLKLYQEGKDDSDDDDNDRRLPPLKEGQKPGLEKVSVDQHFTQPPPRYTEASLVKRMEEL
GIGRPSTYASIISVLQDRNYVTLEKRRFIAQDRGRLVTAFLSKFFERYVQYNFTAELENQ
LDDVANGEREWRDVLTDFWTSFKGNVDEAKELKISDVLDALQVMLENYLFAPREDGSDPH
KCPKCEEGTLSLKLGKFGAFLGCSNYPDCNYTRPMVANDNAGDTAELDGGPKVLGVDAAT
GKEITLRKGPYGVYVQLGEEETVEGKNGKPKKVKPKRTSLPKGLEPSVVDLTKAEELLTL
PRDVGVFPETGETIKANVGRFGPYVQAGSIFASLKTDDDVLTIGENRAITLIADKREKAG
KEIGKHPDDNEPIFLAEGRWGPFVKHKKTNANLPRDTKKEDVTLEMAIAALKEKEAKSGT
KSGKTAASGAKKTAEKKAPAKKAPAKKAPAKKTTAKKPAAKKTTTKKAAAK
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgtcatcgtcgaatcgccagccaaagccaagacgataaacaaatatctcggt
gatgattataaggtactggcctcttttggtcatatccgtgatttgccatccaaagatggt
tcggtcgatacagataataactttgccatgatctgggaaaccgacagccggtcggaaaag
cagatccgtgacattgccgctgccgcacgcgactctgacaccatatatctcgcaactgac
ccggatcgcgagggagaagccatttcctggcatattcttgacgttctggaacagaaaaag
ctgctgcgcggccgcgatgtgcatcgcgttgtttttcacgaaattaccaaacgtgccgta
accgaggcgattgccaacccgcgcaccttgaaccaggaactggtcgatgcctatctggcg
cgccgtgcgctggattatctggtgggctttaacctgtcgccggttttgtggcgcaaattg
cccggttcacgctctgccggacgtgtgcaatcggttgcgttgcgcctgatttgcgaacgc
gaaattgaaattgaagccttccgccccgaagaatactggacactggaagccaattttggc
gtgcccgaaggcaaattttccgcccgcctgacccatcttgatggcaaaaagctcgacaag
ctggcaattggcagcgaaggcgatgccaaaattgccaaggaaaaggtggaatcgcgcagc
tatacagtttccaaggttgaacgcaaggacgtcaaacgccgtccgcagccgcctttcaca
acctccaccctgcagcaggaagcgtcgcgcaaactgggttttggcaccaaacgcaccatg
cagcttgcacagcgcctgtatgaaggggttgatattggcggtgaaaccgttggtttgatc
acctatatgcgtaccgacgccgttgtgctgtcgtccgaggcgctggccggcgcacgccgc
ctgatcgacaaggattacggcaaggattacctgcctgatgccccgcgcagctttgccaac
aaggccaagaacgcacaggaagcgcacgaagccatccgcccgacggatgttttccgccgt
cccgagcaggttgcccgccatcttgataaggaccagctggccctttacaccctgatctgg
aagcgcaccgttgcctgccagatggaagatgcacgctttgaccaggttgccgttgatctg
gcatcaaacgacaaccatgtcgttctgcgcgccaatgggtcggtcgtgaaatttgatggc
ttcctgaaactttaccaggaaggcaaggatgattccgacgatgacgataatgaccgtcgc
ctgccgccgttaaaagaagggcagaaacctggccttgaaaaagtgtcggttgaccagcac
ttcacccagcccccgccccgctataccgaggcaagtttggttaaacggatggaagaactg
ggcattggccgcccgtcaacctatgcgtcgatcatttcggtattgcaggaccgtaactac
gttaccctggaaaaacgccgcttcatcgcccaggatcgcgggcgactggtcactgcattt
ttgtcgaaattctttgaacgttatgttcagtacaatttcaccgccgaacttgaaaaccag
cttgacgatgttgccaatggtgaacgcgaatggcgcgatgttctgaccgatttctggacg
tcgttcaaaggcaatgtcgatgaagccaaggaactcaagatcagtgatgttcttgatgcc
ctgcaggtgatgttggaaaactatctgttcgccccgcgcgaagatggttcggacccgcat
aaatgcccgaaatgtgaagaaggcacgctgagcctgaagctgggcaaatttggcgccttc
ctgggttgttccaattatccggactgtaattacacccgtccgatggtggccaatgacaat
gctggcgacaccgccgagttagatggcggccccaaagttctgggcgttgatgccgccacg
ggtaaggaaattaccttgcgcaagggcccttatggggtgtatgtgcagcttggcgaggaa
gaaaccgtcgagggcaaaaatggcaagcccaagaaggttaaacccaaacgcacctcgctg
cccaagggtcttgaaccctcggtcgttgatttgaccaaggcggaagaattgctgacattg
ccacgcgatgtgggtgtttttccggaaacgggcgaaaccatcaaagccaatgtcgggcgt
ttcgggccatatgtgcaggcaggcagcatttttgcctcccttaagaccgatgatgatgtt
ctaaccattggtgaaaaccgcgccattaccctgattgccgacaaacgcgaaaaagccggc
aaggaaattggcaaacatcctgacgataacgaacccattttcctggcggaaggccggtgg
ggtccgtttgtcaaacacaagaaaacaaacgccaatctgccgcgtgacaccaaaaaggaa
gatgtcacgctggaaatggcaattgcagccctgaaggaaaaagaagccaagtccggtacc
aaatcgggcaaaacggctgcttcgggtgccaagaaaaccgccgagaaaaaagcaccggcg
aaaaaggcccccgccaaaaaggcgcctgcaaagaaaacaactgccaaaaaaccggcagca
aaaaagacaaccacaaaaaaggctgctgccaaatag
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