Thalassospira marina: CSC3H3_15095
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Entry
CSC3H3_15095 CDS
T05224
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
thac
Thalassospira marina
Pathway
thac02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
thac00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CSC3H3_15095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thac03021
]
CSC3H3_15095
Transcription machinery [BR:
thac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CSC3H3_15095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
APP_E2
Motif
Other DBs
NCBI-ProteinID:
AUG53890
UniProt:
A0ABM6QBM1
LinkDB
All DBs
Position
complement(3315997..3318099)
Genome browser
AA seq
700 aa
AA seq
DB search
MSSKTSSAEEKKTSSDNADGPLLDTYKTAIKKLIAKGKEQGHITVDELNAALPSEHFSSE
QIEDVMTNLNEMGINVVENEEGDDSDSNDDDADADAKGNISEDDVGRTDDPVRMYLREMG
SVELLSREGEIAIAKRIEAGREMMIGGICESPLTIQAIVNWHDQLQEGKLLLRDVIDLET
TYGGGPDAAAIGEEVEGEGEEEVEDDLSPLVTSDDEDEDDDKEVEAPEQPVSATPARERK
VSARDDEDDEDEEGDEDEDGEGRSEDDDEDEDDENEQVNVSLSKMEEELTEQVLEKFEKI
AKTYEKLHKAQEQRLAAMNKGETVPAATEKRYGKLKQEMVDLMEDVHLNNFRIEELLDHL
TGLNNRLLGLEGKLLRFADRCKIKRPDFVKQYQGNELDPNWMERVGALPGKGWKLFIERY
ADEIAQLREGVGGVSAEVGLPIGEFRRVYGVVNKGEREAARAKKEMIEANLRLVISIAKK
YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP
VHMIETINKLVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGD
EEDSHLGDFIEDKNAVQPLDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTL
EEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDY
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctaagacttcgagcgctgaagagaaaaagacctcttctgataacgcagacgga
cctcttctcgatacttataaaacagcgatcaagaagctcattgccaagggcaaggagcag
ggtcacatcaccgttgacgagcttaatgcggcactgccgtctgagcatttctcctctgaa
cagatcgaagacgttatgaccaatctcaatgagatgggcatcaatgttgtcgagaatgaa
gaaggggatgacagcgattcgaatgatgatgacgccgatgctgatgcaaaaggcaacatt
tccgaagatgatgttggccgtaccgacgacccggtacgcatgtatcttcgcgaaatgggc
agtgtcgagctgctgtcgcgcgaaggcgaaattgccattgccaagcgtatcgaggctggc
cgtgaaatgatgattggcgggatctgcgaaagtccgctgaccattcaggctattgtcaac
tggcatgaccagttgcaggaaggcaaacttctgcttcgtgacgttatcgaccttgaaact
acctatggcggcggccctgatgcggctgcaatcggcgaagaagtcgagggtgagggcgag
gaagaagtcgaagacgatctgtcgccacttgttacgtctgatgacgaagacgaggatgac
gacaaggaagtcgaagcacccgaacagcctgtgtcggcaacgcctgcgcgcgaacgcaag
gtttctgcgcgcgatgacgaagacgacgaggatgaagaaggcgacgaagacgaagatggc
gaaggccgttccgaagatgatgatgaagacgaagatgacgagaacgaacaggtcaacgtc
tctctttccaaaatggaagaggaactgaccgagcaggttctcgaaaaattcgaaaaaatc
gccaagacctatgagaagctgcacaaggcgcaggagcagcgccttgcggccatgaacaag
ggtgaaaccgttccggcggccaccgaaaagcgttatggcaagctcaagcaggaaatggtt
gatctgatggaagatgttcacctgaacaacttccgcatcgaagaactgctcgatcatctg
acgggtcttaacaaccgtcttctcggcctggaaggcaagcttctgcgttttgctgaccgt
tgcaagatcaagcgtccggatttcgtcaaacagtatcagggcaacgaacttgacccgaac
tggatggaacgtgttggcgcgttgccgggtaaaggctggaaactgttcatcgaacgttat
gccgacgaaatcgcccagttgcgcgaaggcgtgggcggtgtttcggccgaagttggcctg
ccgatcggcgaattccgccgtgtttatggcgtggtcaacaagggcgaacgcgaagcggca
cgtgcgaaaaaggaaatgatcgaggccaacctgcgtctcgtgatttccattgccaagaaa
tataccaaccgtggtttgcagttccttgatcttattcaggaaggcaatatcggcctgatg
aaggccgttgataagtttgaatatcgccgcggttataaattctcgacctatgcgacttgg
tggattcgccaggcgattacccgttctatcgccgaccaggcccggaccatccgtattccg
gttcacatgatcgaaaccatcaacaagctggttcgtacctcgcgccagatgctgcatgaa
atcggtcgggaaccgaccccggaagaactggccgaaaaactgcagatgccgcttgaaaaa
gtgcgcaaggttctcaaaatcgccaaggagccaatctcccttgaaaccccgatcggggac
gaggaagacagccatcttggtgacttcatcgaggacaagaacgctgttcagccgcttgat
gctgcgatccaggccaacctgcgtgagaccactacacgggttctggcatcgctgacgccg
cgtgaagaacgtgttctgcgcatgcgttttggtattggtatgaataccgaccatacgctt
gaagaagtcggccagcagttctcggtgacgcgcgaacgtattcgccagatcgaagccaag
gccctgcgcaagctcaagcatccgtcacgctcgcgcaagctgcggtcattccttgattat
taa
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integrated database retrieval system
