Thalassospira marina: CSC3H3_18260
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Entry
CSC3H3_18260 CDS
T05224
Name
(GenBank) phenylalanine--tRNA ligase subunit beta
KO
K01890
phenylalanyl-tRNA synthetase beta chain [EC:
6.1.1.20
]
Organism
thac
Thalassospira marina
Pathway
thac00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
thac00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
CSC3H3_18260
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
thac01007
]
CSC3H3_18260
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
thac03016
]
CSC3H3_18260
Enzymes [BR:
thac01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.20 phenylalanine---tRNA ligase
CSC3H3_18260
Amino acid related enzymes [BR:
thac01007
]
Aminoacyl-tRNA synthetase
Class II (U)
CSC3H3_18260
Transfer RNA biogenesis [BR:
thac03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
CSC3H3_18260
Prokaryotic type
CSC3H3_18260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B3_4
tRNA_synthFbeta
FDX-ACB
tRNA_bind
B5
DUF4973
Motif
Other DBs
NCBI-ProteinID:
AUG54441
LinkDB
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Position
complement(4036017..4038425)
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AA seq
802 aa
AA seq
DB search
MKFTFDWLKQHLDTDASVDQITEKLTAIGLEIESFEDRSAALADIRVAYIEEAGQHPDAD
RLKLCKVNTGEKIIQVVCGAPNARTGIKVALAQPGAIIPIDGSKLKPGKIRGIESQGMMC
STRELCLGEDHDGIIELPADAEIGAPVAGVLGADDPIIEINLTPNRPDCTAVRGIARDLA
AAGMGTLKDDPYQVAVEGGFDSPVSVTIADDVLANGAAPAFYGRYIRGVKNGESPDWLKA
RLEAIGLRPISILVDITNLATFDLGRPLHVFDADKLNGNLDVRYARDGETLQALNDKEYT
LTSDMVVIADQAAAQSIGGIMGGELTGCQNDTVNVFVECALFDPIVTAKTGRKLQINSDA
RYRFERGVDPQSVIWGIEVATRLITELCGGDVSHVVKAGEVPAPKNSFDLRIGRIAELGG
VSVTQDRASEILTSLGFEVSAKEGVLTAIAPTWRPDIVGEADLVEEVLRIIGYDQIPTVE
LERETSLPVPALSPMQKRVGLSRRVLASRGMYETVTWAFADSRLAGAFTDLKPGLFLANP
ISSDLDVMRPNVLINLISAAGRNQNRGFPDLALFEVGPEFFGDQPGDQRLVAAGLRAGAT
TDRSWTGSRREIDVFDVKADAEALIDALGVPAGNIQVNADGAPSWYHPGRSAALQLGPKN
VLGYFGELHPRILKALDVKGRVVAFELFVENLPMPKKKGTNRPPLNASAFQSVERDFAFL
LDASVSAEQVAKAARSADKGLITDVTIFDLYAGKGIEDGKKSLAFSITLQPTKQTLTDEE
IDGVCKKVIAAVEKATGGALRG
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcacattcgactggctgaaacagcatcttgataccgatgcgtcggttgaccag
atcaccgaaaagctgactgcaatcggccttgagattgaaagcttcgaggaccgttcggca
gcccttgccgatatccgtgttgcctatatcgaagaagccggccagcaccctgatgctgat
cgcctgaaactgtgcaaggtcaataccggcgaaaagatcattcaggtggtttgtggtgcg
cccaatgcccgtaccggcatcaaggtggcactggcccagcccggcgcgatcattccgatt
gatggttccaagctgaaacccggcaagattcgcggtatcgaaagccagggcatgatgtgc
tccacgcgcgagctgtgcctgggcgaagaccatgacggtattattgaattgcctgccgat
gccgaaattggcgcaccggttgccggtgttctgggggctgatgacccgatcattgagatt
aacctgacgccgaaccgcccggattgcaccgctgttcgcggtattgcacgggacctggcg
gctgctggcatgggcacgctgaaggatgatccctatcaggttgccgttgaaggcggcttt
gacagcccggtttcggtcacgattgctgatgacgtgctggcaaatggtgctgcaccggca
ttttatggccgttatattcgtggcgttaaaaatggcgaaagcccggactggctgaaagcc
cgcctggaagccattggcctgcgcccgatttcgattctggtggatatcaccaaccttgcg
acctttgaccttggccgcccgctgcatgtttttgacgcggacaagctgaacggcaatctt
gatgttcgttatgcccgcgacggtgaaacgctgcaggcgctgaatgacaaggaatatacg
ctgaccagcgacatggtcgtgatcgccgatcaggctgctgcgcaaagcattggcggtatc
atggggggcgagcttacgggttgccagaatgatacggttaacgtttttgtcgaatgcgcg
ctgtttgacccgatcgtaacggcaaaaaccggccgtaagttgcagatcaattctgacgcc
cgttaccggttcgagcgtggtgttgacccgcaatccgttatctgggggattgaggttgca
acccgtttgattaccgagctttgcggcggtgacgtttcgcatgtggtaaaggccggggaa
gttccggcaccgaaaaacagctttgatctgcggattgggcgcattgccgagcttggcggt
gtaagcgttacgcaggatcgcgccagcgaaatcctgacctcgcttggttttgaggtttcg
gcaaaagaaggcgttttaaccgccattgccccgacctggcgtcccgacattgttggcgaa
gccgacctggttgaagaagtgctgcgtatcatcggttacgatcagatcccgactgtggaa
ctggaacgtgaaaccagcctgccggtaccggccctaagcccgatgcagaaacgtgttggc
ctgtcgcgccgcgttctggcgtcacgcgggatgtatgaaactgtgacctgggcgtttgcg
gattcgcgtctggcaggtgcctttaccgatctgaagccgggcctgtttttggcaaatccg
atcagttccgatcttgatgtgatgcgccccaatgtgctgatcaacctgatttcggcggct
ggtcgtaaccagaatcgtggtttccccgatctggccctgtttgaagttggtccggaattt
ttcggtgaccagccgggtgatcagcgccttgttgctgccggtttgcgcgcaggtgccacc
accgatcgcagctggaccggttcgcgccgcgagattgacgtgtttgacgtcaaggctgac
gccgaagccctgattgatgcgctgggtgttccggcgggtaatattcaggtgaatgccgac
ggtgcgccgtcatggtatcacccgggccgttcggctgcgctgcagttgggcccgaaaaac
gttcttggctatttcggtgaattgcatccgcgtatccttaaggcgctggatgtcaaaggc
cgtgtggtggcgtttgaactgtttgtcgaaaacctgccgatgcccaaaaagaaaggcacc
aatcgtccgccgctgaatgcttcggcattccagtcggtcgaacgcgactttgccttcctg
cttgatgcgtcggtcagtgccgaacaggtggccaaggccgcacgcagtgccgataagggc
ctgattaccgatgtgacgatttttgacctttatgccggtaaaggcattgaagatggcaaa
aagtcactggcattttcgattaccctgcaaccgaccaaacagacattgaccgatgaagaa
atcgacggtgtttgcaagaaggtgattgcagcggttgaaaaggccaccggtggcgcattg
cgcggttaa
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