Thalassospira marina: CSC3H3_19230
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Entry
CSC3H3_19230 CDS
T05224
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
thac
Thalassospira marina
Pathway
thac02020
Two-component system
thac02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
thac00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CSC3H3_19230 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CSC3H3_19230 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thac03021
]
CSC3H3_19230 (rpoN)
Transcription machinery [BR:
thac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CSC3H3_19230 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Arg_repressor
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AUG54612
UniProt:
A0ABM6QDE5
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All DBs
Position
complement(4248667..4250238)
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AA seq
523 aa
AA seq
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MALKARLDLRQSQSLVMTPQLQQAIKLLQFNNIELSNFIDSELLENPLLERAEPGQTFAE
SGDDAVGNGEQGLDARAIDDFRDREDFRGTDRLASSDSMGAETSGPLDCASDALYDGEGE
ITPDGAPVGANHDYSLPYGGGGGMGGGDGDDLPGLEQTLADTVTLRQSLDDQLNLAFASP
VMRMIGSYLIDMLDDNGYVSGDLGEVSEALGCTPAEVDAVLRRMQGFEPVGIFARNLAEC
LELQLRDRNRFDPAMAALLNNLELLARREFDRLRRICGVDADDLADMIAEIRTLDPRPGR
TSDGEPASPVIPDVLVRAGSSGNWIIELNSDALPRVLVNEEYAAEISTGIRGREEKTFVN
ERLQNANWLVKALHQRATTILKVASEIIRQQDGFFNYGVSHLRPLILRDIAEAISMHEST
VSRVTNGKFMATPRGIFELKYFFTTAISSADGGDSYSSESVRHRIKSLIDGENPKKILSD
DKLVELLQKEGIDIARRTVAKYREAMRIPSSVQRRREKKAQAR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggccctgaaggcaaggcttgatcttcgtcagtctcagtctcttgtcatgacgccgcaa
ttgcagcaggcgatcaaactgttgcaatttaacaatatcgagctttccaacttcatcgac
agcgaacttctggaaaacccccttcttgaacgggcggaaccgggccaaacctttgccgaa
agcggtgatgatgccgttggtaatggtgaacagggcctggatgcccgcgcgattgacgat
ttccgtgaccgcgaagatttccgcggtactgaccgcctggccagcagcgatagtatgggg
gcggaaaccagtggtccgctcgattgtgccagtgatgccctttacgatggcgaaggcgaa
atcacgcctgatggtgccccagtcggggccaaccatgattattcgctgccttatggtggc
gggggcggcatgggcggtggcgatggcgatgacctgccggggctggaacagaccctggcc
gataccgtcaccctgcgccaaagccttgatgaccagctcaaccttgcctttgcatcaccg
gtgatgcgcatgatcggcagctatctgatcgatatgcttgatgacaacggttatgtcagt
ggcgatcttggcgaagtatccgaagcacttggctgtactccggccgaggtcgatgcggtt
ttacgccggatgcagggatttgagccggtcggcatttttgcccgtaatctggcggaatgc
ctggaactgcaattgcgcgaccgtaaccggtttgacccggcgatggcggcccttcttaat
aatctggaattgctggcgcggcgcgaatttgaccgcctgcgccggatttgcggtgtcgat
gccgatgacctggccgacatgatcgccgagattcgcaccctggacccgcgtccgggccgc
accagtgacggtgaaccggcctcgccggttattcccgatgtactggtgcgcgccggatca
tcaggcaactggataatcgagttaaatagtgatgccctgccgcgtgttctggtgaacgag
gaatatgctgccgaaatcagcaccgggattcgcgggcgcgaggaaaaaacttttgtgaac
gagcggttgcagaacgccaactggttggtcaaggcgctgcatcagcgcgcgaccacgatt
ctcaaggtggcctccgagattattcgccagcaggacgggttcttcaattatggggtttca
cacctgcgccccctgattctgcgcgacattgccgaagcgatcagcatgcatgaaagcacg
gtatcgcgggtgacaaacggcaaattcatggccaccccgcgcggtatattcgagctgaaa
tacttcttcaccacggcaatttcatcggcggatggcggtgattcctattcgtcggaatcg
gttcgtcaccggatcaagtcattgatagacggggaaaatccgaaaaaaatcctctcggat
gataaacttgtcgagcttctgcaaaaggaagggatcgacattgcccggcgaacagtggca
aaataccgtgaggcaatgcggattccgtcgtcagtccaaaggcggcgcgagaaaaaagca
caggcccgatag
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