Thalassospira marina: CSC3H3_19530
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Entry
CSC3H3_19530 CDS
T05224
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
thac
Thalassospira marina
Pathway
thac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSC3H3_19530 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thac03021
]
CSC3H3_19530 (rho)
03019 Messenger RNA biogenesis [BR:
thac03019
]
CSC3H3_19530 (rho)
Transcription machinery [BR:
thac03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CSC3H3_19530 (rho)
Messenger RNA biogenesis [BR:
thac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CSC3H3_19530 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_22
S1CSD-TOTE-2
AAA_25
AAA
Spore_III_AA
AAA_14
ResIII
Motif
Other DBs
NCBI-ProteinID:
AUG54665
UniProt:
A0A2N3KW22
LinkDB
All DBs
Position
complement(4310723..4311985)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLQELKLKSPTELLALSEELEIENASTLRKQELMFAILKQLAENDHAIYGEGVLEVLPD
GFGFLRSPEANYLAGPDDIYVSPSQVRRFGLRTGDTVEGQIRSPKEGERYFALLKVDKVN
FDAPEKVRHRINFDNLTPLYPDESLKMERHLDQEGNKDITNRVIELVSPLGKGQRALIVA
PPRTGKTVMLQNIAHAIEENHPEAYLIVLLIDERPEEVTDMDRSVKGEVISSTFDEPAQR
HVQVTEMVLEKAKRLVEHKHDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPK
RFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSELILDRKLADKRIFPAI
DILKSGTRKEELLVGKNELSKMWVLRRILNPMGPQDAMEFLLGKLKTTKNNDDFFDSMNG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatctccaggaactgaaacttaaatctccgaccgagcttctggccctttcggaagag
ctcgaaattgaaaatgccagcaccttgcgcaagcaggagctgatgtttgccattctcaag
cagcttgcagaaaacgatcatgccatttacggcgagggtgttctggaagtgctgccggac
ggtttcggctttttgcgcagcccggaagccaactatctggctggtccggatgatatttat
gtctcgccaagccaggttcgccggtttggtctgcgtaccggtgacactgttgaagggcaa
atccgttcacccaaggaaggggaacgttatttcgcgctgctcaaggtcgacaaggtcaac
tttgatgcgccggaaaaagtccgtcatcgcatcaactttgacaacctgacgccgctttat
ccggatgaatccctgaaaatggaacgtcatctggaccaggaaggcaacaaggacatcacc
aaccgggtgatcgaacttgtatcgccgctgggtaaaggtcagcgtgccctgatcgtcgcg
ccgccgcgcaccggtaaaaccgtgatgctgcagaatatcgcgcatgcgatcgaggaaaac
cacccggaagcctatctgatcgttctgctgattgacgaacgcccggaagaagtgaccgac
atggaccgttcggtgaagggcgaggttatcagctcgacctttgacgaaccggcacagcgt
cacgtccaggttacggaaatggttctggaaaaggccaaacgtctggtcgaacacaagcat
gatgttgtcatcctgctcgactcgatcacccgtctggcgcgtgcatacaacaccgtggtc
ccaagctcgggcaaggttttgaccggtggtgtcgatgcaaacgccctgcaacgtccgaaa
cgtttctttggtgctgcgcgtaacatcgaagaaggtggctcgcttaccattattgcgacc
gcgctgatcgataccggctcgcgtatggacgaagtcatctttgaagaattcaagggtacg
ggtaactccgaacttatcctggatcgtaagctggctgacaaacgtatcttcccggcgatc
gatattcttaaatcgggtacccgtaaggaagagttgctggttggcaaaaacgagctgtcg
aaaatgtgggtactgcgccgtatcctcaacccgatgggcccgcaggacgcgatggaattc
ctgcttggcaagctcaagaccaccaaaaacaacgacgactttttcgattccatgaatgga
tga
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