Thalassospira marina: CSC3H3_20490
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Entry
CSC3H3_20490 CDS
T05224
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
thac
Thalassospira marina
Pathway
thac03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
thac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CSC3H3_20490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thac03400
]
CSC3H3_20490
Enzymes [BR:
thac01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CSC3H3_20490
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CSC3H3_20490
DNA repair and recombination proteins [BR:
thac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CSC3H3_20490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AUG55265
LinkDB
All DBs
Position
4527611..4528453
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AA seq
280 aa
AA seq
DB search
MPELPEVETVCRGLAPVMEGRVLASVVQRRPNLRTPFPENFVTRLTGRRVSQLTRRAKYV
LGYLDDGQVLLIHLGMSGRMTVIEPQNDGALPEAGKHDHVDFVMDSGVLVRFNDPRRFGL
MALTDIDGLATHPMLAGIGPEPLGNQFNTAMLAEALGKRKSPIKTTLLDQRLVAGLGNIY
VCEALFRSRIDPVRPANSLKPAEIDLLYREIREVLEDAIRAGGSSLRDHRQANGELGYFQ
HNFRIYGREGEPCITPDCDGTVGRLVQGGRSTFYCSVCQH
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgccagaagtggaaacagtatgccgtggtcttgccccggtgatggaaggg
cgggttctggcatcggtggtgcaacgccggcccaatctgcgcaccccttttcctgaaaac
ttcgtcacgcgcctgacggggcgtcgcgtcagccagcttacaaggcgggccaaatatgtg
ctgggctatcttgatgacgggcaggttttgctgatccatctgggcatgtcgggccgcatg
acggtgattgaaccgcaaaatgatggcgccctgcccgaagcaggcaagcatgaccatgtg
gattttgtcatggatagcggcgttctggttcggtttaacgacccgcgccgctttggcctg
atggccctgaccgatattgacgggctggcaacgcacccgatgctggcgggaatcggcccc
gaacctttgggtaaccagtttaacaccgccatgctggccgaggcgcttggcaaacgcaaa
agcccgatcaaaaccaccctgcttgatcagcggttggtggcaggccttggcaatatatat
gtgtgcgaagcgctgtttcgatcccgaatcgacccggtccgcccggcaaacagcctgaaa
cctgccgagatcgaccttttatatcgtgaaattcgcgaagttctggaagatgccatccgt
gcagggggatcatccctgcgcgatcaccggcaggcgaatggcgagctaggctatttccag
cataatttccgcatttatggccgcgagggtgaaccctgcattaccccggattgcgatggc
actgttggtcgtctggttcaggggggccgttcgaccttttattgctctgtctgccagcat
tag
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