Thalassospira marina: CSC3H3_20580
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Entry
CSC3H3_20580 CDS
T05224
Name
(GenBank) hypothetical protein
KO
K03086
RNA polymerase primary sigma factor
Organism
thac
Thalassospira marina
Pathway
thac02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
thac00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CSC3H3_20580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thac03021
]
CSC3H3_20580
Transcription machinery [BR:
thac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CSC3H3_20580
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Ank_2
Sigma70_r3
Ank_4
Ank
Sigma70_r1_2
Ank_5
Ank_3
Sigma70_ner
Ank_KRIT1
ZNF318_helical
Motif
Other DBs
NCBI-ProteinID:
AUG55281
UniProt:
A0ABM6QFI5
LinkDB
All DBs
Position
pCSC3H3:complement(22617..24890)
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AA seq
757 aa
AA seq
DB search
MVTWLDAMNRHVPLHRLSISPLFKMAVIGGVKDAVTHLLRQGAEVNAVDEKGRPALIFAA
EKGHLDICRILLEADADPEICDDDGNDALSSAIAHGWKDIEDVLRVYLPPQTPERRQNPP
VIVSLDVRESGCEVGEGSSTVSILDEGAEGSSLDCNELDLSLWEEEVEPTIPDEDASCLL
EAAQVQKRISRHIPIDMDEDWSNVDIELPSVLILRRGTASEEDMIWQTAARHLICDGLDG
GRVTAQQLLRAVPTDPDKIDTPDDNYLMALEVVLQDLRIQVEEASDVIGCLPLEPDDYRK
QAENGAFDNWTASTIDEALVFLSDLLSYTSDPLRQYYRDIGPSKVLSREEEVALAQEIFE
GCRETLRAVARSPAAMVELVEQLESVERGDAPIQSIIGNLSNSYSSEEFADEDENGDEVA
INDFYLDALDIVSDAEIPVEVVLKFDAIRTLHDAMVGVKSTFEREVFADRLAEEIQGLEL
SSDFLELLWSKIRLDGSSHQAIEILDRGLGRAQAAKNLFVNFNLRLVLWIARKYRGLDLM
DLIQEGNIGLLKAIDRFDPSYGAKFSTYATWWIRQSITRAINDKKRLIRFPVYMVESAKK
LERAKDSLSVQLGKIPTIEQLAQEVGLPMKRVREILRAPQDPISITAFPGIECSIDERIE
GSFALNPEEVVVLASLKETLAEAMECLSARELQVLRLRFGLDDHNDHTLEEVGQMYGVTR
ERIRQIEAKALGKLAHPGRSKKLRTFMETFGGARDGD
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggtgacatggttggacgcaatgaacagacatgtacctctccataggcttagtatttct
ccattgttcaagatggctgttattggcggagtaaaagatgcggtgacgcatcttcttcgg
caaggagcagaggtaaatgcagttgacgaaaaaggacgacccgcgcttatttttgctgct
gaaaagggtcacttggatatatgccgtatattacttgaagccgatgcagatccagagata
tgtgatgatgatggtaatgacgccctatcatctgcaatcgcgcatggctggaaagatatc
gaagacgtcttgagagtatatctgccgcctcaaacgcctgaaagaaggcaaaatccgcct
gttattgtgagcctggatgttcgagagtcaggttgtgaggttggcgaaggctcatctact
gtttcaattctggatgagggagcagaaggctcctctctggattgtaacgaattagatctt
tccttatgggaggaggaagttgagcctaccatcccggacgaagatgcatcatgcctcctg
gaggctgcgcaggttcagaagagaatttctcgtcacataccaattgatatggatgaggac
tggtctaacgtagacattgagttgcctagtgttctcattcttcggcggggtacggcatcc
gaagaagacatgatatggcagactgctgctaggcaccttatttgcgacggcttagacggt
ggcagagtaaccgcccaacaactactcagagcagttccgacagatccagataagatagat
accccagatgacaattatctaatggcccttgaagtcgttttgcaagatctccggatacag
gtggaagaagcatctgatgttatcgggtgcctgccgcttgagccagacgattatagaaag
caagctgaaaacggtgcctttgataactggactgcgtcaactatagatgaggcgcttgtt
tttctttccgatcttctttcttacacaagcgatccgctgagacagtactatagggatatc
ggaccatcaaaggttctctcgagagaagaagaagttgcgctagcacaagaaatcttcgaa
ggatgtcgggaaactttgagggctgttgcccgatcccccgctgctatggtcgagcttgtt
gagcagctcgaaagtgtcgagcgcggagatgctcctattcagtcgataataggtaatctt
agcaattcctatagctcggaggaatttgccgatgaagacgaaaatggcgatgaagttgcc
atcaatgacttttatttggatgccctggatatagtttctgatgcagagatccctgtcgaa
gtcgttctgaaatttgatgcaattcggacacttcacgatgcaatggttggtgtgaagtcg
acttttgaacgagaagtttttgccgataggcttgccgaagagatccaagggttggagctc
tcaagtgattttctcgaactcctgtggagcaagatcagattagatggctcaagccatcaa
gcaatcgagatattggatcggggacttggccgagctcaggcggcgaaaaatttattcgta
aatttcaatctaagattggttctgtggattgcccgaaaataccgcggtttggatttgatg
gacctgatacaggagggcaacattgggcttttgaaggcaattgatcgtttcgacccctct
tatggagcaaaattctcgacttacgctacatggtggatccgccaatccatcaccagagct
ataaatgataagaaacgactcatacgatttccagtttatatggtggaaagcgctaagaag
ttagaaagagcgaaggattctctcagtgtccaattgggtaagataccaacaatagaacag
ctagctcaggaagttggtctcccgatgaagcgcgttcgagaaattttgcgagctcctcag
gatccaatttcaataacggcatttccgggcattgagtgttccatagacgaacgtatcgag
ggttcattcgcattaaatccagaggaagttgtcgtactggcttctctgaaagaaactctg
gcagaggcaatggagtgtctttctgcacgggaattgcaagtgttacggctgcgcttcgga
cttgatgatcacaatgaccatactctcgaagaggtcggacaaatgtatggcgtcacacgg
gagcgcattcggcagatagaggccaaggcgctcggcaagctggcccaccccggccgttct
aagaaattgcgaacgttcatggaaacttttggcggggcaagagatggtgattaa
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