Thalassospira sp. B30-1: IT971_04130
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Entry
IT971_04130 CDS
T11046
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
thad Thalassospira sp. B30-1
Brite
KEGG Orthology (KO) [BR:
thad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thad03019
]
IT971_04130 (hrpB)
Enzymes [BR:
thad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IT971_04130 (hrpB)
Messenger RNA biogenesis [BR:
thad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IT971_04130 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
ResIII
HA2_N
Flavi_DEAD
AAA_19
AAA_30
HA2_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QPL36518
LinkDB
All DBs
Position
904469..906973
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AA seq
834 aa
AA seq
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MPKAFPILPIDAVLPDLCAVLETGTNAVLQAPPGAGKTTKVPLALLESAWRNDQKIVMLE
PRRLAARAAARRMAQLLGESVGETVGYRVRFDSKVSTSTRIEVVTEGILVRMIQNDPELS
GIGCVIFDEFHERSLDADLGLALALETQAALRDDLRIVVMSATLDGDPIAALMGCCPVIT
SEGRAFPVETKYIPIRPDAWIDREMTAAIRLALREESGSILTFLPGQGEITRVEVALKDG
LDPSVIIAPLYGAMETRAQDIAIEPAPDGMRKVVLATAIAETSLTIDGIRVVVDCGLQRL
PRFNPASGMTRLVTVKSSQASAEQRRGRAGRLEPGVCYRLWAEAEHRARPPFTAPEIADA
DLAPLTLELAQWGVSDPASLPWLDQPDGAKIDQARDVLRRLEAIDDANRITPMGTAMAGL
PVHPRLAHMMLRGARLGLGEVACALAALLSDRDFMRGRGADLRLRVEAILARKAPKMITE
AARQLSRRLGDAAKKEASKAGSHNPADPVDHADQVGLLLAFAYPDRIGERRKGTDARYRL
SGGRGGILANDDGLASEPYIAVAELDGQAREARIYLAAPLSRASLETHFADQISEGTEVF
WDAQSDAVQARWQRRIGALVLDEKTTRDEAGPDAIAAAMIEGIRRLGLHCLPWDKAAEGL
RERIAFLHRVDPENWPDMSDDALLASLEDWLMPYLGGINKRSQLKQVNLAEALVSGIDWN
RRQELDRLAPTHWTVPTGSHIRIDYSGETPGLPVRLQEMFGATETPKIAGGKVAVTLHLL
SPAQRPLQVTSDLVGFWNGSYAQVKAEMKGRYPKHYWPDDPLQAEPTRRGKSRM
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaagccttccccatccttccgattgatgcggttctgcccgacctttgtgccgtg
ctggaaaccggtaccaatgcggttttgcaggccccgccgggggccgggaaaacgaccaag
gtgcccttggcattgctggaaagtgcatggcggaatgaccagaagatcgtgatgctggag
ccccggcggctggccgcacgggcagcggcgcgccggatggcgcagttattgggcgaaagc
gttggtgagacggtcggctatcgcgtgcggtttgacagcaaggtttccaccagcacccgg
attgaggtcgtgaccgagggtattctggtgcgcatgattcagaatgatccggaactgtca
ggcattggttgcgtgatttttgatgaatttcacgaaaggtcgctggatgccgatctgggg
ttggcattggcactggaaacgcaggcagcccttcgcgatgatttgcgcattgtcgtaatg
tcggcaacccttgatggtgatccgattgcggctctgatgggctgttgcccggtgatcacc
agcgaaggccgcgctttcccggttgaaacaaaatatatcccgatccgccctgatgcgtgg
attgatcgggaaatgacggcggcgatccggttggcacttcgcgaggaaagcgggtcgatc
ctgaccttcctgcccgggcagggggaaatcacgcgggttgaggtggcgttgaaagatggg
cttgatccatcggtgatcattgcgccgctttatggcgcgatggaaaccagggcacaggat
attgcgattgagcccgcaccagatggcatgcgcaaggtggtgctggcgactgcgattgcc
gaaacgtcattgacgatagatggcattcgggtggtggtggattgcgggttgcagcgtttg
ccgaggtttaacccggcatcgggcatgacgcggctggtgacggtcaaatcatcgcaggcc
agtgctgaacaacgccgtggccgtgcggggcggttagagcccggcgtgtgttatcgcctg
tgggcggaagccgaacatcgtgcccgcccgccctttaccgcaccggaaattgccgatgcc
gatcttgcgccgctgacgttggaactcgcgcagtggggcgtgtctgatccggcaagcctg
ccgtggctggatcagcccgacggggcaaagatcgatcaggcgcgcgatgtgttgaggcgg
cttgaggcgattgacgatgccaaccggatcacgccgatgggcaccgcgatggccggattg
ccggtgcatccacgcttggcgcatatgatgttgcgtggggcgcgccttggactgggtgag
gttgcctgtgcgctggcggcattgttatcggatcgggatttcatgcgcggtcgcggcgcg
gatttacggcttagggtagaggcgattttggcccgcaaggccccgaaaatgatcaccgag
gccgcaaggcagctttcgcggcgattgggtgatgccgcgaagaaagaggccagcaaagcg
ggtagtcataaccccgctgatcctgttgatcatgccgatcaggtcgggttgcttctggcc
tttgcctatcccgaccggattggcgaacggcgcaaggggactgatgcgcggtatcgtctg
tcgggtgggcgtggcgggattctggcgaacgatgatgggttggcgagcgaaccctatatc
gcggtggcggagcttgacggacaggcacgagaggcaaggatttaccttgccgcaccgtta
tcgcgcgcgagccttgaaacccatttcgccgatcagatttccgaagggacagaggtcttc
tgggatgcgcaaagcgatgcggtgcaggcgcgctggcaacggcggatcggggcgctggtg
cttgacgaaaagaccacccgtgacgaagccggacctgatgccattgcggccgcgatgatc
gaaggcattcgtcgtcttggcctgcattgtttgccttgggacaaggcggccgagggactg
cgcgaacggatcgcgttcctgcaccgggttgatccggaaaactggcccgacatgagcgac
gatgcgcttttggcatcgcttgaggattggctgatgccatatcttggcgggatcaataaa
cgcagccagcttaaacaggtcaatttggccgaggcattggtatcaggcattgactggaac
aggcgccaagagcttgatcgtctggcaccgacccactggaccgtgccaaccgggtcacac
atccgcattgattatagtggcgaaacaccagggcttcctgtccggttgcaggaaatgttt
ggcgcgaccgaaactcccaaaattgctggtggtaaggtggcggtaacgttgcatctgctg
tcgccagcgcaaaggccgcttcaggtgacgtctgatctggtggggttctggaacggctcc
tatgcgcaggtcaaggccgagatgaagggacggtatcccaaacattactggcccgacgac
ccgttgcaggccgaaccgacgcgtcggggtaaaagccggatgtga
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