Thalassospira sp. B30-1: IT971_05750
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Entry
IT971_05750 CDS
T11046
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thad Thalassospira sp. B30-1
Pathway
thad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IT971_05750 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thad03021
]
IT971_05750 (rpoC)
03400 DNA repair and recombination proteins [BR:
thad03400
]
IT971_05750 (rpoC)
Enzymes [BR:
thad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IT971_05750 (rpoC)
Transcription machinery [BR:
thad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IT971_05750 (rpoC)
DNA repair and recombination proteins [BR:
thad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IT971_05750 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Peptidase_M23
DUF7567
Motif
Other DBs
NCBI-ProteinID:
QPL36808
LinkDB
All DBs
Position
1234010..1238203
Genome browser
AA seq
1397 aa
AA seq
DB search
MNELMKIFGQPQGTQSFDQIRIQIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKHMKYRGIICEKCGVEVTLAKVRRERMGHIELAAPVAHIWFMKSL
PSRLGLLLDMTLKDLERILYFENYVVIEPGLTPLKMGELLSEDQYMTAQEEYGEDSFRAG
IGAEAIRDMLAAIDLDDERETAKIDLKETNSEAKRKKLVKRLKLIEAFQESGARPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QESVDALFDNGRRGRPITGANKRPLKSMSDMLKGKQGRFRQNLLGKRVDYSGRSVITVGP
NLKLHQCGLPKKMALELFKPFVYAKLELYGMATTIKAAKRMVEKERAEVWDILEQVIREH
PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARTLMMSTNNILSPASGKPIIVPSQDIVLGLYYISMERDGQPGEGMSFVNIAEIEQALDA
GVVTLHSKINARYKTVDENNEPITIRVQTTAGRMLLSELLPRHPRIPFATINKLLTKKDV
SNVIDVVYRHCGQKETVIFADRMMGLGFNWACKAGISFGKDDMIIPEAKETLVGATHDKV
KEYEQQYQDGLITRGEKYNKVVDAWSQCTDDVSEAMMKVISATAEGDNVNSVYMMAHSGA
RGSAAQMRQLAAMRGLMAKPDGSIIETPIISNFKEGLTVQEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDSIITQHDCGTERGLDIAAVVDSGEVIETLSDRILGRFTADEIVN
PSTGEVIVPKNEMVVEDHLDLIEKAGVEMARIRSVLTCDAETGVCGHCYGRDLARGTTVN
IGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEVSGVEANFDATVKLKNRAVVTNSS
GVMIVMARNLEILLIDKTGRERAKYRVPYGAKLLADDGDQITRGQKLAEWDPYTLPIITE
KEGYVNYVDLLENVTIREVYDEATGIASKTVIDWKSMPKASDLKPRVTLRNENGEVINLD
NGLEARYFLSVDAILSVENGQKVNAGDVLARIPREGSKTRDITGGLPRVAELFEARKPKD
HAIIADIAGRVEFGKDYKNKRRVIVHPLEDSGLTEPVEYMIPKGKHLAVQEGDFVEKGDQ
LLDGSPVPHDILRVMGVPALADYLVNEIQEVYRLQGVKINDKHIEVIVRQMLQKVEVTKT
GDTTLLVGEIIDRVDFDAENERAVKEGGELAEAAPVLQGITKASLQTHSFISAASFQETT
RVLTEAAVSGKTDTLIGLKENVIVGRLIPAGTGAVMNRFRALAAERDKNVQIEAEEEIGD
NFGPQAGAESPSLPAGE
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagttgatgaagatcttcgggcagccgcagggcacccagagcttcgatcagatc
cggattcagatcgccagcccggagcgtatccgctcctggtcgttcggcgagatcaagaaa
ccggagaccatcaactaccggaccttcaaaccggaacgcgacggcctgttctgtgcgcgc
atttttggtccggtgaaggattacgaatgcttgtgcggcaagtacaagcatatgaaatat
cgcggcattatctgtgagaaatgcggcgtcgaagtgactctggccaaagttcgtcgtgaa
cgtatgggccatatcgaactggcggcacctgttgcccatatctggttcatgaagtcgctg
ccgagccgtctgggtctgctgctggacatgacgctcaaggatcttgagcgcattctgtat
ttcgaaaactatgtggtcatcgagccgggtctgaccccgctcaagatgggtgagcttctt
tcagaagatcagtacatgaccgcacaggaagagtatggcgaagatagtttccgtgccggt
atcggtgctgaagcgatccgcgacatgcttgcagcgatcgatcttgatgacgaacgcgaa
accgcgaaaatcgacctcaaggaaaccaattccgaagccaagcgcaagaagctggtcaaa
cgcctgaagctgatcgaagctttccaggagtccggtgcgcgtccggaatggatgatcctt
gaagtgattccggtcattccgccagaactgcgtccgctggttccgctggatggtggccgt
ttcgcaacgtccgaccttaacgacctttaccgtcgtgtgatcaaccgtaacaaccgtctg
aagcgcctgatcgagcttcgtgcgcccgatatcatcgtgcgtaacgaaaaacgtatgctt
caggaatcggttgatgcgctgtttgacaacggccgtcgcggtcgtccgatcaccggtgcc
aacaagcgtccgctcaaatcgatgtcggacatgcttaaaggcaagcagggccgtttccgt
cagaaccttctgggtaaacgcgtcgactattccggtcgttcggttattaccgtgggtccg
aacctgaaactgcatcagtgcggcctgccgaagaaaatggcgctcgaactgttcaagccg
ttcgtctatgcgaagcttgagctgtacgggatggcaaccaccatcaaggctgcaaagcgt
atggtggaaaaagagcgtgccgaagtctgggatatccttgagcaggttatccgtgaacat
ccggtcatgctcaaccgtgcaccgacccttcaccgtcttggtatccaggcgttcgagcct
accctgatcgaaggtaaggcgatccagctgcatccgctcgtctgtacggctttcaacgcc
gacttcgacggtgaccagatggccgttcacgtgccgctgtcgcttgaagcacagcttgaa
gcacgtaccctgatgatgtcgaccaacaacatcctttcgccggcttcgggtaaaccgatc
atcgtgccgtcgcaggatattgtccttggtctgtactacatctcgatggaacgcgacggt
cagccgggcgagggcatgtcctttgtcaatatcgctgaaatcgaacaggcacttgatgcc
ggtgttgtgaccctgcattcgaaaatcaatgcacgttacaaaaccgtcgatgaaaacaac
gagccgatcaccatccgtgttcagaccacggctggccgtatgttgctgtccgaactgctg
ccgcgtcatccgcgcatcccgttcgcgaccatcaacaagctgctgaccaagaaagacgtg
tcgaatgttatcgacgtcgtctatcgtcactgtggccagaaagagaccgttatctttgct
gaccgcatgatgggtcttggctttaactgggcgtgcaaagccggtatttcgtttggcaag
gatgacatgatcattccggaagccaaggaaaccctggttggtgcgacccatgacaaggtc
aaggaatacgagcagcagtatcaggacggcctgatcacccgcggtgagaaatacaacaag
gtcgtcgacgcctggtcgcagtgcaccgatgacgtttccgaagcgatgatgaaagtcatc
tcggcaacggcagaaggtgacaatgtgaactcggtttacatgatggcgcactccggtgcc
cgtggttctgctgcccagatgcgtcagctggctgccatgcgcggcctgatggcaaagccg
gacggctcgatcatcgagaccccgattatctcgaacttcaaagaaggcctgaccgtgcag
gagtacttcaactccacccacggtgcccgtaaaggtctggccgataccgcattgaaaacg
gcgaactcgggttatctgacccgtcgtctcgtcgacgtcgcacaggacagcatcatcacc
cagcatgattgcggtaccgaacgtggcctcgacattgctgcggttgtcgactccggcgaa
gttatcgagacgctgtctgatcgtatcctcggtcgtttcaccgctgacgagattgtcaat
ccgtcaaccggcgaagtcatcgttccgaagaacgaaatggttgtcgaagatcaccttgat
ctgatcgaaaaagcgggcgtcgaaatggcgcgtatccgctcggtcctgacctgtgatgcc
gaaaccggcgtttgcggccattgctatggtcgtgacctggcacgtggtaccacggtgaac
attggtgaagctgtcggtgttatcgccgcacagtcgatcggtgagccgggcacgcagctt
acgatgcgtacgttccacattggtggtgcggcacagcgtggtgcggaagtttcgggtgtc
gaagccaacttcgatgcgaccgtcaaactgaagaaccgtgctgtcgttacgaattcgagc
ggtgtcatgattgtcatggcacgtaacctcgaaatcctgctgatcgacaagaccggccgt
gaacgtgcgaaataccgcgtcccgtacggtgcgaaactgcttgctgatgacggtgaccag
atcacgcgcggccagaaactggccgagtgggatccgtacaccctgccgatcatcaccgag
aaagaaggttatgtgaactatgtcgaccttctcgagaacgtaaccattcgcgaagtctat
gacgaagcgacgggtatcgcctcgaaaacggttatcgactggaagagcatgccgaaggca
tccgaccttaagccgcgcgttacgcttcgtaacgaaaacggcgaggtcatcaacctggat
aacggccttgaagcccgttacttcctgtcggttgatgccattctctcggttgagaacggt
cagaaagtcaacgccggtgacgtgcttgcacgtattccgcgcgaagggtcgaaaacccgt
gacatcaccggtggtctgccgcgtgtggctgaattgttcgaggcacgcaagccgaaggac
cacgccatcatcgccgacatcgctggtcgtgtcgagttcggtaaggactacaagaacaag
cgccgtgtcatcgtgcacccgcttgaagattctggtctgaccgaaccggttgaatacatg
atcccgaaaggcaagcatcttgccgttcaggaaggggacttcgtagagaagggcgaccag
ctgcttgatggctcgccggttccgcacgatatccttcgcgtcatgggcgttccggcactg
gccgattacctggtcaacgagatccaggaagtctaccgtttgcagggcgttaagattaac
gacaagcacatcgaagtcatcgttcgtcagatgcttcagaaagtggaagtgaccaaaacc
ggtgacaccacgcttctggttggcgaaatcatcgaccgtgtcgatttcgatgccgaaaac
gaacgtgccgttaaagaaggcggcgaactggccgaagctgcaccggtccttcaggggatc
accaaagcatcgctccagacgcattccttcatctcggccgcgtcgttccaggaaaccaca
cgcgttcttaccgaagcagccgtatcgggcaaaaccgataccctgatcggtctgaaagaa
aacgtgattgtgggtcgtctgatcccggcaggtaccggtgcggtgatgaaccgcttccgc
gcccttgccgccgaacgcgacaagaacgtacagatcgaggcagaagaggaaatcggcgac
aatttcggcccgcaggccggtgccgagtccccgtcattgccagccggcgagtaa
DBGET
integrated database retrieval system
